JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM52_chr1_1912591_1924279	1/1	t0001	306	362	84	66	155	13	42	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	t0002	306	1	0	0	1	0	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	t0003	318	1	0	0	0	1	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM53_chr1_44648247_44679481	1/0	t0001	1403	245	64	54	90	11	25	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/1	t0002	1403	32	1	10	2	5	13	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0003	1403	25	0	7	14	2	2	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0004	1403	7	7	0	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0005	1403	5	4	1	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0006	1403	4	3	0	1	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0007	1403	2	2	0	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0008	1403	2	0	2	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0009	1403	2	0	0	2	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0010	1403	2	2	0	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0011	1403	2	2	0	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0012	1403	1	0	1	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0013	1403	1	0	0	1	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0014	1403	1	1	0	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0015	1403	1	0	0	0	0	1	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0016	1403	1	1	0	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0017	1403	1	0	1	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0018	1403	1	1	0	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	t0019	1403	1	0	0	0	0	1	copy fasta	TMEM53	chr1	44648247	44679481
TMEM54_chr1_32889595_32906389	1/1	t0001	362	333	89	49	149	10	34	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	t0002	362	15	2	11	0	0	2	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	t0003	362	7	0	0	7	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	t0004	362	4	4	0	0	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	t0005	362	2	0	2	0	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	t0006	362	1	1	0	0	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM59L_chr19_18607870_18626039	0/1	t0001	592	250	68	38	113	7	23	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	1/0	t0002	593	84	0	7	65	2	9	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	t0003	593	30	3	15	0	2	10	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	t0004	592	29	9	8	9	1	2	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	t0005	592	12	10	2	0	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	t0006	593	1	0	0	1	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	t0007	592	1	1	0	0	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	t0008	593	1	1	0	0	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59_chr1_54021681_54058204	1/0	t0001	5486	115	9	23	54	3	25	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0002	5486	92	10	19	55	3	5	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0003	5486	43	0	2	41	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0004	5483	30	19	3	6	0	2	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0005	5486	11	11	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0006	5483	10	9	1	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0007	5486	9	6	2	0	0	1	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0008	5479	5	5	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0009	5486	5	5	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0010	5485	3	0	1	1	0	1	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0011	5483	3	3	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0012	5485	3	0	1	2	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0013	5486	2	0	0	2	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0014	5483	2	2	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204