JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM59_chr1_54021681_54058204	0/0	t0015	5486	2	2	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0016	5486	2	2	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0017	5486	2	1	1	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0018	5486	2	2	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0019	5483	2	2	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0020	5486	1	0	0	0	0	1	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0021	5486	1	0	0	1	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0022	5486	1	0	0	1	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0023	5486	1	0	0	0	0	1	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/1	t0024	5486	1	0	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0025	5486	1	0	0	1	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0026	5486	1	0	1	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0027	5486	1	0	0	1	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0028	5486	1	0	0	1	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0029	5486	1	0	0	0	0	1	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0030	5486	1	0	0	0	0	1	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0031	5486	1	1	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0032	5486	1	1	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0033	5483	1	1	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0034	5485	1	0	1	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0035	5483	1	1	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0036	5486	1	0	1	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0037	5483	1	1	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	t0038	5486	1	1	0	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM60_chr7_77788728_77803434	1/0	t0001	476	316	84	58	122	13	38	copy fasta	TMEM60	chr7	77788728	77803434
TMEM60_chr7_77788728_77803434	0/1	t0002	476	76	12	17	34	1	11	copy fasta	TMEM60	chr7	77788728	77803434
TMEM60_chr7_77788728_77803434	0/0	t0003	476	5	0	2	0	2	1	copy fasta	TMEM60	chr7	77788728	77803434
TMEM60_chr7_77788728_77803434	0/0	t0004	476	1	0	1	0	0	0	copy fasta	TMEM60	chr7	77788728	77803434
TMEM60_chr7_77788728_77803434	0/0	t0005	476	1	1	0	0	0	0	copy fasta	TMEM60	chr7	77788728	77803434
TMEM60_chr7_77788728_77803434	0/0	t0006	476	1	1	0	0	0	0	copy fasta	TMEM60	chr7	77788728	77803434
TMEM61_chr1_54975628_54997288	0/1	t0001	624	243	39	50	103	13	37	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	t0002	624	90	32	10	43	0	5	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	1/0	t0003	624	74	13	5	47	3	5	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	t0004	624	8	3	1	4	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	t0005	624	7	5	2	0	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	t0006	635	5	0	0	5	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	t0007	624	1	0	0	1	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	t0008	624	1	0	0	1	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	t0009	624	1	0	1	0	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	t0010	624	1	0	0	0	0	1	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	t0011	624	1	1	0	0	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	t0012	624	1	0	0	1	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	t0013	624	1	0	0	1	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	t0014	624	1	1	0	0	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	t0015	624	1	0	1	0	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM62_chr15_43128586_43190144	1/1	t0001	776	329	67	58	160	12	30	copy fasta	TMEM62	chr15	43128586	43190144
TMEM62_chr15_43128586_43190144	0/0	t0002	776	15	9	0	6	0	0	copy fasta	TMEM62	chr15	43128586	43190144
TMEM63A_chr1_225840536_225887380	1/0	t0001	1686	171	43	36	73	4	14	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/1	t0002	1686	87	10	22	36	5	13	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0003	1686	48	21	0	26	0	1	copy fasta	TMEM63A	chr1	225840536	225887380