JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM63A_chr1_225840536_225887380	0/0	t0004	1686	42	0	5	33	0	4	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0005	1686	37	2	3	20	0	12	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0006	1686	9	9	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0007	1686	5	0	3	0	2	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0008	1686	5	0	0	5	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0009	1686	3	3	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0010	1686	3	0	0	0	3	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0011	1686	3	0	0	3	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0012	1686	3	0	2	0	1	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0013	1686	3	3	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0014	1686	2	2	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0015	1686	1	0	0	0	1	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0016	1686	1	0	1	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0017	1686	1	0	0	1	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0018	1686	1	1	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	t0019	1686	1	0	0	1	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63B_chr6_44122554_44160519	1/1	t0001	786	182	37	34	76	10	23	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0002	790	72	13	13	37	2	7	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0003	790	61	9	13	27	3	9	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0004	790	34	0	4	24	0	6	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0005	787	26	13	9	0	1	3	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0006	790	7	7	0	0	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0007	789	4	0	0	4	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0008	789	3	2	0	1	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0009	786	2	2	0	0	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0010	787	2	2	0	0	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0011	790	1	0	0	1	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0012	790	1	1	0	0	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0013	790	1	1	0	0	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0014	790	1	0	0	1	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0015	790	1	0	0	1	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0016	790	1	1	0	0	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0017	787	1	0	1	0	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0018	790	1	1	0	0	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	t0019	790	1	1	0	0	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63C_chr14_77176798_77264495	0/0	t0001	2942	91	2	20	56	0	13	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	1/0	t0002	2943	49	18	11	7	4	8	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0003	2943	32	0	6	20	3	3	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0004	2943	29	24	2	1	0	2	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/1	t0005	2943	29	5	15	1	1	6	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0006	2943	20	9	5	4	1	1	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0007	2943	10	1	4	5	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0008	2943	9	8	0	0	0	1	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0009	2942	5	3	0	1	1	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0010	2943	5	4	0	0	0	1	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0011	2943	5	4	1	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0012	2942	3	3	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0013	2942	2	0	0	2	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0014	2942	2	0	0	2	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0015	2942	2	0	0	1	0	1	copy fasta	TMEM63C	chr14	77176798	77264495