JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM63C_chr14_77176798_77264495	0/0	t0016	2942	2	0	2	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0017	2943	2	0	1	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0018	2943	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0019	2943	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0020	2943	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0021	2943	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0022	2943	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0023	2943	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0024	2943	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0025	2943	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0026	2943	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0027	2943	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0028	2943	1	0	1	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0029	2943	1	0	0	0	1	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0030	2943	1	0	1	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0031	2943	1	0	0	0	0	1	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0032	2943	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0033	2943	1	0	1	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0034	2943	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0035	2943	1	0	0	0	0	1	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0036	2943	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0037	2943	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0038	2943	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0039	2943	1	0	0	0	1	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0040	2942	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0041	2942	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	t0042	2942	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM64_chr8_90617000_90651083	0/1	t0001	3850	130	12	26	72	6	13	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	1/0	t0002	3850	100	11	23	49	4	12	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0003	3850	19	0	0	19	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0004	3849	15	14	1	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0005	3850	11	10	1	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0006	3850	11	9	2	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0007	3849	10	0	9	1	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0008	3850	9	9	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0009	3850	5	5	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0010	3850	4	4	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0011	3850	4	0	0	4	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0012	3849	3	0	0	2	1	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0013	3850	3	2	1	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0014	3850	3	3	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0015	3849	2	0	0	1	0	1	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0016	3849	2	1	1	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0017	3850	2	2	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0018	3850	2	2	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0019	3850	1	1	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0020	3850	1	0	1	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0021	3850	1	0	0	1	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0022	3850	1	0	1	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0023	3850	1	0	0	1	0	0	copy fasta	TMEM64	chr8	90617000	90651083