JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM64_chr8_90617000_90651083	0/0	t0024	3850	1	1	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0025	3850	1	0	0	0	1	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0026	3849	1	1	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0027	3850	1	1	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0028	3849	1	1	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0029	3850	1	1	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0030	3850	1	1	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	t0031	3850	1	1	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM65_chr8_124301189_124377701	0/1	t0001	8314	56	8	6	33	4	4	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0002	8316	44	3	7	27	1	6	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0003	8316	29	0	13	10	0	6	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0004	8313	19	1	5	12	1	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0005	8320	18	0	0	15	1	2	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0006	8313	17	0	2	13	0	2	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0007	8313	16	3	3	7	0	3	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0008	8424	15	0	1	12	0	2	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0009	8316	12	11	1	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	1/0	t0010	8316	11	3	5	1	1	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0011	8316	9	9	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0012	8320	8	7	1	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0013	8314	6	6	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0014	8319	5	0	0	1	0	4	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0015	8316	5	4	1	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0016	8316	5	0	0	5	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0017	8311	4	2	1	1	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0018	8320	3	3	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0019	8431	3	2	1	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0020	8305	3	0	0	3	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0021	8428	3	1	2	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0022	8320	3	0	0	3	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0023	8423	3	3	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0024	8317	2	2	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0025	8313	2	2	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0026	8313	2	0	2	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0027	8319	2	0	0	2	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0028	8316	2	0	0	2	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0029	8324	2	2	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0030	8310	2	0	0	2	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0031	8310	2	0	0	2	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0032	8316	2	0	0	2	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0033	8313	1	0	0	1	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0034	8326	1	0	0	0	0	1	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0035	8322	1	0	0	1	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0036	8313	1	0	0	1	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0037	8313	1	0	0	1	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0038	8314	1	0	0	0	0	1	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0039	8309	1	1	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0040	8314	1	0	0	0	0	1	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0041	8313	1	0	0	1	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0042	8313	1	0	0	1	0	0	copy fasta	TMEM65	chr8	124301189	124377701