JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM65_chr8_124301189_124377701	0/0	t0043	8295	1	0	1	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0044	8319	1	1	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0045	8319	1	1	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0046	8328	1	1	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0047	8313	1	0	0	1	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0048	8431	1	1	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0049	8323	1	0	1	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0050	8324	1	1	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0051	8310	1	0	0	1	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0052	8310	1	1	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0053	8316	1	1	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0054	8316	1	0	1	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0055	8316	1	1	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0056	8311	1	0	1	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0057	8316	1	0	0	1	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0058	8316	1	0	0	0	0	1	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0059	8428	1	0	0	0	1	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0060	8424	1	0	0	0	0	1	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0061	8320	1	0	0	1	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0062	8316	1	0	0	0	1	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0063	8310	1	1	0	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0064	8310	1	0	0	1	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM65_chr8_124301189_124377701	0/0	t0065	8441	1	0	1	0	0	0	copy fasta	TMEM65	chr8	124301189	124377701
TMEM67_chr8_93749894_93823121	1/1	t0001	1691	299	78	61	114	11	33	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	t0002	1691	8	7	1	0	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	t0003	1691	3	3	0	0	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	t0004	1691	2	0	1	0	1	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	t0005	1691	1	1	0	0	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	t0006	1691	1	1	0	0	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	t0007	1691	1	1	0	0	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	t0008	1691	1	0	0	0	0	1	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	t0009	1691	1	0	1	0	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	t0010	1691	1	1	0	0	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM68_chr8_55733758_55778378	0/0	t0001	1597	141	32	30	57	5	17	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/1	t0002	1599	64	2	9	42	2	8	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	t0003	1597	54	13	9	32	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	1/0	t0004	1599	36	21	5	1	1	7	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	t0005	1597	28	4	0	16	1	7	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	t0006	1597	22	12	6	0	1	3	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	t0007	1597	14	0	0	14	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	t0008	1597	7	6	1	0	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	t0009	1597	1	0	1	0	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	t0010	1597	1	1	0	0	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	t0011	1599	1	0	1	0	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	t0012	1597	1	0	0	1	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	t0013	1599	1	0	0	1	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	t0014	1597	1	1	0	0	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM69_chr1_45683181_45699436	1/1	t0001	722	213	59	45	80	7	20	copy fasta	TMEM69	chr1	45683181	45699436
TMEM69_chr1_45683181_45699436	0/0	t0002	718	110	24	21	49	4	12	copy fasta	TMEM69	chr1	45683181	45699436
TMEM69_chr1_45683181_45699436	0/0	t0003	722	13	0	0	13	0	0	copy fasta	TMEM69	chr1	45683181	45699436