JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM69_chr1_45683181_45699436	0/0	t0004	718	6	0	0	6	0	0	copy fasta	TMEM69	chr1	45683181	45699436
TMEM69_chr1_45683181_45699436	0/0	t0005	724	4	2	0	2	0	0	copy fasta	TMEM69	chr1	45683181	45699436
TMEM69_chr1_45683181_45699436	0/0	t0006	718	2	2	0	0	0	0	copy fasta	TMEM69	chr1	45683181	45699436
TMEM69_chr1_45683181_45699436	0/0	t0007	722	1	0	0	1	0	0	copy fasta	TMEM69	chr1	45683181	45699436
TMEM69_chr1_45683181_45699436	0/0	t0008	722	1	0	0	0	1	0	copy fasta	TMEM69	chr1	45683181	45699436
TMEM69_chr1_45683181_45699436	0/0	t0009	722	1	0	0	1	0	0	copy fasta	TMEM69	chr1	45683181	45699436
TMEM69_chr1_45683181_45699436	0/0	t0010	722	1	1	0	0	0	0	copy fasta	TMEM69	chr1	45683181	45699436
TMEM70_chr8_73971195_73987783	1/1	t0001	1250	208	43	26	110	7	20	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0002	1250	76	22	16	28	1	9	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0003	1250	67	8	17	20	6	16	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0004	1250	13	0	11	1	0	1	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0005	1250	6	4	2	0	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0006	1250	4	3	1	0	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0007	1275	3	0	0	3	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0008	1250	3	0	0	3	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0009	1250	3	3	0	0	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0010	1250	3	0	0	3	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0011	1250	3	3	0	0	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0012	1250	2	0	0	0	1	1	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0013	1250	2	0	1	0	0	1	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0014	1250	2	2	0	0	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0015	1250	1	1	0	0	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0016	1275	1	0	0	1	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0017	1250	1	1	0	0	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0018	1250	1	0	0	0	1	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0019	1250	1	0	0	1	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0020	1250	1	0	0	1	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	t0021	1250	1	0	0	1	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM71_chr8_132704941_132765582	1/0	t0001	1170	137	4	39	64	5	24	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	t0002	1170	119	49	15	50	2	3	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/1	t0003	1170	98	13	13	57	3	11	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	t0004	1170	8	7	1	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	t0005	1170	4	4	0	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	t0006	1170	3	0	3	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	t0007	1170	2	0	0	2	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	t0008	1170	2	0	0	2	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	t0009	1170	1	0	0	1	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	t0010	1170	1	0	0	1	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	t0011	1170	1	1	0	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	t0012	1170	1	0	1	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	t0013	1170	1	0	0	1	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM72_chr10_44906337_44942010	0/0	t0001	2053	136	32	22	67	5	10	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	1/0	t0002	2053	132	5	21	81	6	18	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/1	t0003	2053	48	14	10	8	7	8	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0004	2053	18	16	2	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0005	2053	12	0	0	12	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0006	2053	12	3	0	9	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0007	2053	12	1	5	0	0	6	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0008	2053	8	6	2	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0009	2053	8	6	2	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010