JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM72_chr10_44906337_44942010	0/0	t0010	2053	5	3	2	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0011	2053	3	1	2	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0012	2053	2	0	0	2	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0013	2053	1	0	0	1	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0014	2053	1	0	0	0	0	1	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0015	2053	1	0	0	1	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0016	2053	1	0	0	0	0	1	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0017	2053	1	0	0	1	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0018	2053	1	0	0	1	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0019	2053	1	0	0	1	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0020	2053	1	1	0	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0021	2053	1	1	0	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	t0022	2053	1	1	0	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM74B_chr20_1175570_1189981	1/0	t0001	1106	150	13	41	76	6	13	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/1	t0002	1108	56	1	8	37	4	5	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0003	1098	52	1	5	36	0	10	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0004	1102	42	6	10	16	1	9	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0005	1104	39	17	4	12	2	4	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0006	1102	33	16	5	9	2	1	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0007	1100	13	13	0	0	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0008	1098	10	9	1	0	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0009	1094	7	2	1	4	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0010	1096	7	2	4	0	0	1	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0011	1100	5	0	1	4	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0012	1110	5	0	1	3	0	1	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0013	1106	5	2	1	1	0	1	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0014	1094	4	4	0	0	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0015	1100	4	4	0	0	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0016	1098	2	0	0	0	1	1	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0017	1100	2	0	1	1	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0018	1108	2	1	0	0	0	1	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0019	1102	1	1	0	0	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0020	1104	1	1	0	0	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0021	1106	1	0	1	0	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0022	1108	1	0	0	0	0	1	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0023	1108	1	0	0	1	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	t0024	1104	1	1	0	0	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74_chr8_108773974_108792594	1/1	t0001	5366	173	19	43	74	6	29	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0002	5366	96	7	24	56	4	5	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0003	5370	44	10	0	30	0	4	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0004	5370	13	12	1	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0005	5366	13	10	1	0	0	2	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0006	5366	7	0	0	7	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0007	5365	6	6	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0008	5366	5	5	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0009	5366	4	3	1	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0010	5366	3	0	0	3	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0011	5366	3	3	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0012	5370	3	0	0	3	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0013	5366	3	0	0	3	0	0	copy fasta	TMEM74	chr8	108773974	108792594