JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM74_chr8_108773974_108792594	0/0	t0014	5370	2	2	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0015	5370	2	2	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0016	5366	2	0	0	2	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0017	5366	2	2	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0018	5366	2	0	0	2	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0019	5366	2	0	2	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0020	5366	2	0	0	2	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0021	5370	1	1	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0022	5370	1	0	0	1	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0023	5366	1	0	1	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0024	5366	1	0	0	1	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0025	5366	1	1	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0026	5366	1	1	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0027	5366	1	1	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0028	5366	1	0	0	1	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0029	5366	1	0	0	1	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0030	5366	1	0	0	1	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0031	5354	1	1	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0032	5366	1	0	0	1	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0033	5366	1	0	0	0	0	1	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0034	5366	1	0	1	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0035	5366	1	1	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0036	5366	1	1	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0037	5366	1	0	0	0	0	1	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0038	5366	1	1	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0039	5366	1	0	0	1	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0040	5366	1	1	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0041	5366	1	1	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0042	5366	1	0	0	1	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	t0043	5366	1	1	0	0	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM79_chr1_156279325_156297443	0/0	t0001	957	64	2	6	42	4	10	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0002	959	50	8	2	37	0	3	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0003	967	46	1	16	21	1	7	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0004	963	30	11	6	4	4	5	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0005	965	25	4	4	15	0	2	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0006	969	25	6	3	15	1	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	1/0	t0007	971	22	9	4	6	2	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0008	961	19	7	2	6	0	4	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0009	965	19	13	1	1	0	4	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0010	967	19	3	2	9	0	5	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0011	941	16	0	13	0	2	1	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0012	969	10	0	2	6	2	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0013	961	8	6	1	0	0	1	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0014	955	8	6	1	1	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0015	971	5	1	2	2	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0016	963	4	2	2	0	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0017	973	4	1	1	2	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/1	t0018	971	1	0	0	0	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0019	959	1	1	0	0	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	t0020	959	1	0	0	1	0	0	copy fasta	TMEM79	chr1	156279325	156297443