JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM79_chr1_156279325_156297443	0/0	t0021	963	1	1	0	0	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM80_chr11_690816_709129	1/1	t0001	992	283	51	56	126	13	35	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	t0002	992	88	25	12	43	2	6	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	t0003	992	11	10	1	0	0	0	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	t0004	992	9	0	5	0	3	1	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	t0005	992	5	3	2	0	0	0	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	t0006	992	5	5	0	0	0	0	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	t0007	992	1	0	1	0	0	0	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	t0008	992	1	0	0	1	0	0	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	t0009	992	1	0	1	0	0	0	copy fasta	TMEM80	chr11	690816	709129
TMEM81_chr1_205078129_205089460	1/1	t0001	565	385	95	64	168	18	38	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	t0002	565	16	0	3	11	0	2	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	t0003	532	1	0	0	0	0	1	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	t0004	565	1	0	0	1	0	0	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	t0005	565	1	0	1	0	0	0	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	t0006	565	1	0	0	0	0	1	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	t0007	565	1	1	0	0	0	0	copy fasta	TMEM81	chr1	205078129	205089460
TMEM82_chr1_15737499_15752982	1/1	t0001	412	243	24	52	127	7	31	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	t0002	412	130	59	27	18	10	16	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	t0003	405	6	5	1	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	t0004	412	3	3	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	t0005	394	3	0	0	3	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	t0006	412	2	0	0	0	1	1	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	t0007	405	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM86A_chr11_18693779_18709785	1/1	t0001	2885	241	47	44	111	10	27	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0002	2885	98	9	13	62	1	13	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0003	2885	33	1	2	28	0	2	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0004	2885	19	14	3	0	2	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0005	2885	12	0	3	4	3	2	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0006	2885	11	10	1	0	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0007	2886	8	0	5	1	0	2	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0008	2885	8	0	6	2	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0009	2885	6	6	0	0	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0010	2885	5	0	0	5	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0011	2885	4	0	2	0	1	1	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0012	2885	3	0	0	2	0	1	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0013	2885	2	2	0	0	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0014	2885	2	2	0	0	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0015	2885	1	0	0	0	1	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0016	2885	1	1	0	0	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0017	2885	1	1	0	0	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0018	2885	1	1	0	0	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0019	2886	1	1	0	0	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0020	2885	1	0	0	1	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0021	2885	1	0	0	1	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0022	2885	1	0	1	0	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0023	2885	1	1	0	0	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0024	2885	1	0	0	1	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0025	2886	1	1	0	0	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0026	2885	1	1	0	0	0	0	copy fasta	TMEM86A	chr11	18693779	18709785