JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM86A_chr11_18693779_18709785	0/0	t0027	2902	1	0	0	1	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0028	2885	1	0	0	1	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0029	2885	1	0	0	1	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	t0030	2886	1	0	0	1	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86B_chr19_55221638_55233763	0/0	t0001	566	204	31	38	103	10	22	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/1	t0002	566	102	27	23	37	2	12	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	t0003	566	58	16	14	22	1	5	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	1/0	t0004	566	42	4	4	21	2	10	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	t0005	566	5	4	1	0	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	t0006	566	4	4	0	0	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	t0007	566	3	3	0	0	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	t0008	566	2	2	0	0	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	t0009	566	2	2	0	0	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	t0010	566	2	2	0	0	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	t0011	566	1	1	0	0	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	t0012	566	1	1	0	0	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	t0013	566	1	1	0	0	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	t0014	763	1	0	0	0	1	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	t0015	566	1	0	0	0	0	1	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	t0016	566	1	0	0	1	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM87A_chr15_42205447_42278433	0/1	t0001	1298	255	57	43	112	12	30	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87A_chr15_42205447_42278433	0/0	t0002	1297	59	26	10	21	0	2	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87A_chr15_42205447_42278433	1/0	t0003	1297	8	6	1	0	0	0	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87A_chr15_42205447_42278433	0/0	t0004	1298	3	0	0	0	0	3	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87A_chr15_42205447_42278433	0/0	t0005	1298	2	2	0	0	0	0	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87A_chr15_42205447_42278433	0/0	t0006	1298	1	0	0	1	0	0	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87A_chr15_42205447_42278433	0/0	t0007	1298	1	1	0	0	0	0	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87A_chr15_42205447_42278433	0/0	t0008	1298	1	0	0	0	0	1	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87B_chr2_112050269_112124314	0/0	t0001	3495	88	17	14	50	1	6	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	1/1	t0002	3495	80	3	30	24	4	17	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0003	3495	41	5	4	21	5	6	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0004	3495	19	13	5	0	1	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0005	3496	15	13	2	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0006	3495	6	0	0	6	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0007	3496	5	4	1	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0008	3494	5	0	2	0	1	2	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0009	3496	4	0	2	0	0	2	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0010	3495	4	4	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0011	3495	4	4	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0012	3495	4	4	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0013	3496	3	0	0	0	2	1	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0014	3494	3	0	3	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0015	3495	3	3	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0016	3495	2	0	0	0	2	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0017	3495	2	2	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0018	3495	2	0	2	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0019	3495	2	0	0	0	0	2	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0020	3495	1	0	1	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0021	3495	1	0	0	0	0	1	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0022	3495	1	0	1	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314