JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM87B_chr2_112050269_112124314	0/0	t0023	3495	1	0	0	1	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0024	3496	1	1	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0025	3495	1	0	0	0	0	1	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0026	3496	1	1	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0027	3496	1	1	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0028	3495	1	1	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0029	3495	1	0	0	1	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0030	3495	1	0	1	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0031	3495	1	0	1	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0032	3495	1	0	0	1	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0033	3495	1	1	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0034	3495	1	0	0	1	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0035	3495	1	1	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0036	3495	1	1	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0037	3495	1	0	0	1	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0038	3495	1	0	0	1	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0039	3494	1	0	0	1	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0040	3495	1	1	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0041	3495	1	1	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0042	3496	1	1	0	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	t0043	3495	1	0	1	0	0	0	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM88B_chr1_1420871_1435255	0/0	t0001	3100	1	1	0	0	0	0	copy fasta	TMEM88B	chr1	1420871	1435255
TMEM88B_chr1_1420871_1435255	1/0	t0002	2726	1	0	0	0	0	0	copy fasta	TMEM88B	chr1	1420871	1435255
TMEM88B_chr1_1420871_1435255	0/1	t0003	3202	1	0	0	0	0	0	copy fasta	TMEM88B	chr1	1420871	1435255
TMEM88B_chr1_1420871_1435255	0/0	t0004	3234	1	1	0	0	0	0	copy fasta	TMEM88B	chr1	1420871	1435255
TMEM88_chr17_7850066_7861099	1/1	t0001	395	414	93	75	188	16	40	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	t0002	395	11	0	0	3	0	8	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	t0003	395	2	2	0	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	t0004	395	1	1	0	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	t0005	395	1	0	1	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	t0006	395	1	0	1	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	t0007	395	1	0	1	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	t0008	395	1	0	0	1	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM89_chr3_48615759_48626769	1/1	t0001	97	311	90	44	119	16	40	copy fasta	TMEM89	chr3	48615759	48626769
TMEM89_chr3_48615759_48626769	0/0	t0002	97	1	0	0	1	0	0	copy fasta	TMEM89	chr3	48615759	48626769
TMEM8B_chr9_35824228_35870515	0/1	t0001	11893	63	3	14	37	4	4	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0002	11893	49	1	9	33	0	6	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0003	11895	48	2	12	22	5	7	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	1/0	t0004	11896	34	16	2	14	0	1	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0005	11893	13	0	0	13	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0006	11893	11	0	2	8	0	1	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0007	11896	10	8	0	0	0	2	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0008	11893	8	7	1	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0009	11894	7	0	0	7	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0010	11895	7	7	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0011	11893	6	0	0	6	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0012	11893	6	0	2	2	0	2	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0013	11893	6	1	1	0	3	1	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0014	11893	6	5	1	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0015	11894	6	0	0	6	0	0	copy fasta	TMEM8B	chr9	35824228	35870515