JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM8B_chr9_35824228_35870515	0/0	t0066	11896	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0067	11893	1	0	0	1	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0068	11893	1	0	0	0	0	1	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0069	11892	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0070	11893	1	0	0	0	0	1	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0071	11893	1	0	0	0	0	1	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0072	11893	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0073	11893	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0074	11893	1	0	0	1	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0075	11893	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0076	11893	1	0	0	0	0	1	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0077	11893	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0078	11893	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0079	11893	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0080	11893	1	0	0	1	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0081	11896	1	0	0	1	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0082	11897	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0083	11893	1	0	0	0	0	1	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0084	11897	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0085	11893	1	0	1	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0086	11893	1	0	1	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0087	11894	1	0	0	0	0	1	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0088	11893	1	0	0	1	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0089	11893	1	0	0	1	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0090	11893	1	0	1	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0091	11893	1	0	1	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0092	11893	1	0	1	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0093	11893	1	0	0	0	1	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0094	11893	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0095	11893	1	0	1	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0096	11893	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0097	11893	1	0	0	1	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0098	11893	1	0	0	1	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0099	11893	1	0	1	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0100	11894	1	0	0	1	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0101	11893	1	0	0	1	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0102	11893	1	0	0	0	1	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0103	11895	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0104	11897	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0105	11897	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0106	11898	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	t0107	11893	1	0	0	0	0	1	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM91_chr19_41371533_41389083	0/1	t0001	562	206	52	39	78	8	28	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	1/0	t0002	562	174	30	33	85	5	20	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	t0003	562	4	4	0	0	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	t0004	562	3	3	0	0	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	t0005	562	2	2	0	0	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	t0006	562	1	1	0	0	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	t0007	562	1	0	0	0	1	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	t0008	562	1	1	0	0	0	0	copy fasta	TMEM91	chr19	41371533	41389083