JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM91_chr19_41371533_41389083	0/0	t0009	562	1	0	0	1	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	t0010	562	1	1	0	0	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM92_chr17_50269466_50286485	0/0	t0001	2214	112	6	21	72	0	13	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0002	2214	77	1	4	65	1	6	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	1/0	t0003	2214	49	8	16	17	2	5	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0004	2214	41	0	1	33	1	6	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0005	2214	35	0	7	24	1	3	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0006	2214	24	5	4	14	0	1	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0007	2214	24	1	12	0	4	7	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0008	2214	22	3	10	0	7	2	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0009	2214	22	22	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0010	2213	16	16	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0011	2214	8	8	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0012	2214	5	5	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0013	2214	4	4	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0014	2214	4	3	1	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0015	2214	4	4	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0016	2214	4	1	3	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0017	2214	3	3	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0018	2214	3	0	1	0	0	2	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/1	t0019	2214	2	0	1	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0020	2214	2	0	0	2	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0021	2214	1	0	0	0	0	1	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0022	2214	1	0	0	1	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0023	2214	1	1	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0024	2214	1	1	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0025	2214	1	1	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0026	2214	1	0	1	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0027	2214	1	0	1	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0028	2214	1	1	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0029	2214	1	1	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0030	2214	1	0	1	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0031	2214	1	1	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0032	2214	1	0	0	0	0	1	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0033	2213	1	1	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0034	2214	1	0	0	1	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0035	2214	1	0	0	1	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0036	2214	1	0	1	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0037	2214	1	0	0	1	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0038	2214	1	0	0	1	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0039	2214	1	0	1	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0040	2214	1	1	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	t0041	2214	1	0	0	0	0	1	copy fasta	TMEM92	chr17	50269466	50286485
TMEM94_chr17_75451635_75505452	1/0	t0001	1342	169	67	28	60	4	9	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/1	t0002	1342	140	9	24	78	7	21	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	t0003	1343	12	1	1	8	0	2	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	t0004	1342	11	5	2	3	0	1	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	t0005	1343	6	3	0	0	1	2	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	t0006	1342	4	0	2	0	2	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	t0007	1342	2	1	1	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452