JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM94_chr17_75451635_75505452	0/0	t0008	1342	2	0	0	2	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	t0009	1342	2	0	0	2	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	t0010	1343	1	1	0	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	t0011	1342	1	0	0	1	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	t0012	1343	1	0	1	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	t0013	1343	1	0	0	0	0	1	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	t0014	1342	1	0	1	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	t0015	1342	1	1	0	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM95_chr17_7350156_7362219	1/0	t0001	637	344	74	56	164	13	36	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/1	t0002	637	77	17	29	15	5	10	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/0	t0003	637	3	3	0	0	0	0	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/0	t0004	637	2	2	0	0	0	0	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/0	t0005	637	1	1	0	0	0	0	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/0	t0006	637	1	0	0	1	0	0	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/0	t0007	637	1	1	0	0	0	0	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/0	t0008	637	1	1	0	0	0	0	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/0	t0009	637	1	1	0	0	0	0	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/0	t0010	637	1	0	1	0	0	0	copy fasta	TMEM95	chr17	7350156	7362219
TMEM97_chr17_28314200_28333685	1/1	t0001	1933	284	69	61	108	8	36	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0002	1933	66	7	8	43	2	6	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0003	1932	5	2	1	1	0	1	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0004	1933	3	3	0	0	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0005	1933	2	2	0	0	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0006	1932	1	1	0	0	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0007	1932	1	1	0	0	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0008	1932	1	0	0	1	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0009	1933	1	1	0	0	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0010	1933	1	0	1	0	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0011	1933	1	1	0	0	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0012	1933	1	1	0	0	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0013	1933	1	0	0	1	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0014	1933	1	0	0	1	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0015	1933	1	0	0	0	0	1	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0016	1933	1	0	0	1	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0017	1933	1	0	0	1	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0018	1933	1	0	0	1	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	t0019	1933	1	0	1	0	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM98_chr17_32923153_32949315	1/0	t0001	3538	120	5	19	78	3	14	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0002	3538	99	18	19	48	9	5	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0003	3538	34	26	4	0	2	2	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0004	3538	33	7	9	13	1	3	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0005	3538	23	0	1	18	1	3	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/1	t0006	3538	15	0	9	0	2	3	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0007	3539	11	1	9	0	0	1	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0008	3538	7	2	1	3	0	1	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0009	3537	5	3	2	0	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0010	3538	5	5	0	0	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0011	3538	5	4	1	0	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0012	3539	4	4	0	0	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0013	3538	4	3	1	0	0	0	copy fasta	TMEM98	chr17	32923153	32949315