JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM98_chr17_32923153_32949315	0/0	t0014	3538	4	2	2	0	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0015	3538	4	0	2	0	0	2	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0016	3540	4	3	1	0	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0017	3538	4	4	0	0	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0018	3534	3	0	0	3	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0019	3538	2	0	0	0	0	2	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0020	3538	2	0	0	0	0	2	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0021	3538	1	0	0	1	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0022	3538	1	0	0	1	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0023	3538	1	0	0	1	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0024	3538	1	0	0	1	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0025	3538	1	0	0	0	0	1	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0026	3539	1	1	0	0	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0027	3538	1	1	0	0	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0028	3538	1	1	0	0	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0029	3538	1	0	0	0	0	1	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0030	3538	1	0	0	1	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0031	3538	1	1	0	0	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0032	3538	1	0	0	1	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0033	3538	1	0	0	1	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	t0034	3538	1	1	0	0	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM9B_chr11_8942202_8969442	0/0	t0001	1247	129	18	8	86	2	15	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/1	t0002	1241	122	13	28	64	7	9	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	1/0	t0003	1248	81	30	10	27	2	11	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0004	1247	46	15	4	25	0	2	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0005	1248	33	3	17	0	4	9	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0006	1241	6	0	0	5	1	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0007	1259	5	5	0	0	0	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0008	1254	4	3	1	0	0	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0009	1248	3	3	0	0	0	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0010	1248	2	2	0	0	0	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0011	1259	2	0	0	2	0	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0012	1229	1	1	0	0	0	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0013	1241	1	1	0	0	0	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0014	1247	1	0	0	1	0	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0015	1254	1	1	0	0	0	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0016	1247	1	0	0	1	0	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0017	1247	1	1	0	0	0	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0018	1253	1	1	0	0	0	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0019	1265	1	0	0	1	0	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9B_chr11_8942202_8969442	0/0	t0020	1266	1	1	0	0	0	0	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9_chr1_201129772_201159474	1/0	t0001	1443	182	33	25	99	3	21	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/1	t0002	1444	112	14	28	45	7	17	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0003	1443	49	5	9	32	0	3	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0004	1443	28	4	17	0	5	2	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0005	1443	14	0	0	14	0	0	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0006	1443	10	10	0	0	0	0	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0007	1443	9	8	1	0	0	0	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0008	1444	6	6	0	0	0	0	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0009	1443	5	5	0	0	0	0	copy fasta	TMEM9	chr1	201129772	201159474