JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMEM9_chr1_201129772_201159474	0/0	t0010	1443	2	2	0	0	0	0	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0011	1443	2	2	0	0	0	0	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0012	1444	1	0	0	0	0	1	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0013	1444	1	0	0	1	0	0	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0014	1443	1	0	0	0	0	1	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0015	1444	1	0	0	0	1	0	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0016	1444	1	1	0	0	0	0	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0017	1444	1	0	0	1	0	0	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0018	1443	1	1	0	0	0	0	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0019	1443	1	0	0	1	0	0	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0020	1443	1	0	0	0	0	1	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0021	1443	1	1	0	0	0	0	copy fasta	TMEM9	chr1	201129772	201159474
TMEM9_chr1_201129772_201159474	0/0	t0022	1443	1	0	0	1	0	0	copy fasta	TMEM9	chr1	201129772	201159474
TMF1_chr3_69014827_69057333	1/0	t0001	3598	134	23	13	87	2	8	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0002	3598	93	6	14	61	3	9	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/1	t0003	3598	82	26	22	22	5	6	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0004	3599	19	0	5	0	3	11	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0005	3599	8	7	1	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0006	3598	8	0	2	6	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0007	3598	7	0	2	0	2	3	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0008	3598	6	6	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0009	3598	5	0	5	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0010	3598	4	0	0	4	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0011	3598	4	4	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0012	3598	4	0	0	4	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0013	3598	3	3	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0014	3598	3	3	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0015	3599	2	0	0	2	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0016	3598	2	2	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0017	3598	2	0	0	0	2	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0018	3598	2	2	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0019	3598	2	0	2	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0020	3598	1	1	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0021	3600	1	1	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0022	3599	1	0	0	0	0	1	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0023	3598	1	0	0	0	1	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0024	3598	1	0	1	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0025	3598	1	1	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0026	3598	1	0	1	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0027	3598	1	1	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0028	3598	1	1	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0029	3598	1	0	0	1	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0030	3598	1	0	0	1	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	t0031	3598	1	1	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMIE_chr3_46696392_46715886	1/0	t0001	1295	357	70	67	170	13	36	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/1	t0002	1295	29	0	7	17	1	3	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/0	t0003	1283	21	19	2	0	0	0	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/0	t0004	1295	12	0	2	5	3	2	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/0	t0005	1295	3	3	0	0	0	0	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/0	t0006	1295	1	0	0	0	1	0	copy fasta	TMIE	chr3	46696392	46715886