JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMIE_chr3_46696392_46715886	0/0	t0007	1295	1	1	0	0	0	0	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/0	t0008	1295	1	0	0	0	0	1	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/0	t0009	1309	1	0	0	1	0	0	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/0	t0010	1295	1	0	1	0	0	0	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/0	t0011	1295	1	1	0	0	0	0	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/0	t0012	1295	1	1	0	0	0	0	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/0	t0013	1295	1	0	1	0	0	0	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/0	t0014	1295	1	0	0	1	0	0	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/0	t0015	1295	1	1	0	0	0	0	copy fasta	TMIE	chr3	46696392	46715886
TMIGD1_chr17_30311333_30339057	1/0	t0001	438	215	56	42	85	7	24	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD1_chr17_30311333_30339057	0/1	t0002	439	112	33	26	34	5	13	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD1_chr17_30311333_30339057	0/0	t0003	440	20	9	7	1	0	3	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD1_chr17_30311333_30339057	0/0	t0004	439	1	0	1	0	0	0	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD2_chr19_4287227_4307389	1/1	t0001	377	273	73	59	97	10	32	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	t0002	377	94	17	14	48	3	12	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	t0003	377	57	3	5	42	1	6	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	t0004	378	5	0	0	5	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	t0005	377	2	1	1	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	t0006	378	1	1	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	t0007	377	1	1	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	t0008	377	1	1	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	t0009	377	1	1	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	t0010	377	1	0	1	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD3_chr1_111478348_111508633	1/0	t0001	619	404	84	50	219	9	41	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	t0002	619	26	1	15	3	1	6	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	t0003	619	9	5	3	0	1	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/1	t0004	619	7	0	5	0	1	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	t0005	619	7	0	6	0	0	1	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	t0006	619	5	5	0	0	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	t0007	619	4	4	0	0	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	t0008	619	1	0	1	0	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	t0009	619	1	1	0	0	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMLHE_chrX_155484011_155617952	1/0	t0001	2686	65	17	9	27	3	8	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/1	t0002	2690	36	3	10	16	0	6	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0003	2691	25	8	3	9	0	5	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0004	2687	12	6	5	0	1	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0005	2689	12	2	2	6	1	1	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0006	2692	10	1	2	4	1	2	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0007	2688	5	1	1	2	0	1	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0008	2686	4	4	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0009	2690	3	0	0	3	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0010	2690	2	0	2	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0011	2690	1	0	0	0	1	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0012	2690	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0013	2687	1	0	1	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0014	2684	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0015	2684	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0016	2689	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0017	2688	1	0	1	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0018	2688	1	0	1	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952