JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMLHE_chrX_155484011_155617952	0/0	t0019	2687	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0020	2686	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0021	2691	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0022	2688	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0023	2689	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0024	2691	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0025	2690	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0026	2689	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0027	2690	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0028	2691	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0029	2688	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0030	2689	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0031	2689	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0032	2694	1	0	1	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0033	2684	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0034	2694	1	0	0	0	0	1	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0035	2692	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0036	2691	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0037	2692	1	0	0	0	0	1	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0038	2691	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0039	2693	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0040	2694	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0041	2690	1	0	0	0	0	1	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0042	2692	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0043	2692	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0044	2692	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0045	2690	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0046	2691	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0047	2689	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0048	2688	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0049	2680	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0050	2661	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0051	2677	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	t0052	2697	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMOD1_chr9_97496666_97606743	1/1	t0001	2232	233	31	46	112	12	30	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0002	2232	23	13	0	10	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0003	2232	17	0	11	5	0	1	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0004	2232	11	10	1	0	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0005	2232	11	10	1	0	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0006	2232	8	6	2	0	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0007	2232	7	3	2	1	1	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0008	2232	5	5	0	0	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0009	2232	3	0	0	0	1	2	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0010	2232	3	3	0	0	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0011	2232	2	0	2	0	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0012	2232	2	2	0	0	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0013	2232	2	0	1	0	0	1	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0014	2232	2	0	0	0	0	2	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0015	2232	1	1	0	0	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0016	2232	1	1	0	0	0	0	copy fasta	TMOD1	chr9	97496666	97606743