JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMOD1_chr9_97496666_97606743	0/0	t0017	2232	1	1	0	0	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0018	2232	1	0	0	1	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	t0019	2232	1	0	0	1	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD2_chr15_51746597_51821363	0/0	t0001	8095	81	20	8	46	0	7	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0002	8096	62	12	8	38	2	2	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	1/0	t0003	8095	31	2	16	0	3	9	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/1	t0004	8095	25	2	13	1	3	5	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0005	8096	25	0	9	15	0	1	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0006	8096	19	0	1	18	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0007	8095	19	18	1	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0008	8095	11	0	0	5	0	6	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0009	8096	9	0	0	7	1	1	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0010	8095	8	7	1	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0011	8095	7	0	0	7	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0012	8096	7	7	0	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0013	8096	5	0	0	4	0	1	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0014	8095	4	0	0	4	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0015	8095	4	0	3	0	1	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0016	8096	3	3	0	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0017	8096	3	1	2	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0018	8095	3	3	0	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0019	8095	3	3	0	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0020	8096	2	0	2	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0021	8096	2	0	0	2	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0022	8095	2	2	0	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0023	8096	2	0	0	1	0	1	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0024	8083	2	2	0	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0025	8095	2	0	1	1	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0026	8095	2	0	1	0	0	1	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0027	8095	2	0	2	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0028	8096	1	0	1	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0029	8096	1	0	0	1	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0030	8095	1	0	0	0	0	1	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0031	8096	1	1	0	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0032	8096	1	0	0	1	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0033	8096	1	1	0	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0034	8096	1	1	0	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0035	8096	1	0	1	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0036	8096	1	1	0	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0037	8096	1	1	0	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0038	8096	1	0	0	0	0	1	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0039	8096	1	0	0	1	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0040	8095	1	0	0	1	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0041	8096	1	0	0	1	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0042	8094	1	1	0	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0043	8095	1	0	0	1	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0044	8096	1	0	0	1	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0045	8096	1	0	0	1	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0046	8095	1	0	0	1	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	t0047	8095	1	0	0	1	0	0	copy fasta	TMOD2	chr15	51746597	51821363