JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMOD3_chr15_51824653_51920725	0/0	t0042	7171	1	1	0	0	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0043	7171	1	0	0	0	0	1	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0044	7171	1	1	0	0	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0045	7171	1	0	0	1	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0046	7177	1	1	0	0	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0047	7175	1	0	0	1	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0048	7178	1	0	0	0	0	1	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0049	7177	1	0	0	0	0	1	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0050	7176	1	0	0	1	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0051	7177	1	0	0	1	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0052	7172	1	1	0	0	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0053	7170	1	1	0	0	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0054	7142	1	0	0	0	0	1	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0055	7141	1	0	1	0	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0056	7137	1	0	1	0	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0057	7143	1	0	0	1	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0058	7142	1	0	0	1	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0059	7141	1	1	0	0	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0060	7142	1	1	0	0	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0061	7173	1	0	0	1	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0062	7172	1	0	0	1	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0063	7172	1	0	0	1	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	t0064	7173	1	0	0	1	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD4_chr1_151164987_151180981	1/1	t0001	195	406	98	66	180	16	44	copy fasta	TMOD4	chr1	151164987	151180981
TMPO_chr12_98510590_98555351	1/0	t0001	2772	145	24	34	59	10	17	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0002	2772	64	0	6	53	1	4	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/1	t0003	2772	63	14	18	16	5	9	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0004	2772	57	31	5	17	0	4	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0005	2772	13	2	3	0	2	6	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0006	2772	12	11	1	0	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0007	2772	5	5	0	0	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0008	2772	2	2	0	0	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0009	2772	2	0	0	2	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0010	2772	2	1	1	0	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0011	2772	1	1	0	0	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0012	2772	1	0	0	0	0	1	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0013	2772	1	1	0	0	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0014	2772	1	0	0	1	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0015	2772	1	0	1	0	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0016	2772	1	0	0	1	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0017	2772	1	0	0	1	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0018	2772	1	0	1	0	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0019	2772	1	1	0	0	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0020	2772	1	1	0	0	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	t0021	2772	1	0	0	0	0	1	copy fasta	TMPO	chr12	98510590	98555351
TMPPE_chr3_33085422_33102146	0/1	t0001	2949	174	4	49	89	8	23	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0002	2949	137	40	8	79	0	10	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0003	2949	44	17	16	3	4	4	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0004	2949	23	1	3	17	0	2	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0005	2949	17	6	4	0	5	2	copy fasta	TMPPE	chr3	33085422	33102146