JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMPPE_chr3_33085422_33102146	0/0	t0006	2949	9	0	0	8	0	1	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0007	2949	9	8	1	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0008	2949	8	0	0	8	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0009	2949	8	4	0	4	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0010	2949	5	5	0	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0011	2949	3	3	0	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0012	2949	3	0	0	3	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0013	2949	2	0	0	2	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0014	2949	2	0	0	2	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0015	2949	2	2	0	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0016	2949	1	0	0	0	0	1	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0017	2949	1	1	0	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0018	2949	1	0	0	0	0	1	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0019	2949	1	0	0	1	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0020	2949	1	0	1	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0021	2949	1	1	0	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0022	2949	1	0	0	1	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0023	2949	1	0	0	1	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0024	2949	1	0	0	0	1	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0025	2949	1	1	0	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0026	2949	1	1	0	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	1/0	t0027	2949	1	0	0	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0028	2949	1	0	1	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0029	2949	1	0	0	1	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0030	2959	1	0	0	1	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0031	2949	1	0	0	1	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0032	2949	1	0	0	1	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0033	2949	1	0	0	1	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0034	2949	1	0	1	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	t0035	2949	1	0	0	1	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPRSS11A_chr4_67904395_67968493	0/0	t0001	2049	107	1	13	80	1	12	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	1/0	t0002	2048	69	8	15	33	2	10	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0003	2049	57	3	14	27	4	9	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0004	2049	26	24	0	2	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0005	2049	24	1	1	19	1	2	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0006	2049	20	5	0	11	1	3	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0007	2049	17	8	8	0	0	1	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/1	t0008	2048	12	1	1	5	2	2	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0009	2049	8	7	1	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0010	2049	7	7	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0011	2048	6	0	3	0	3	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0012	2049	6	5	1	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0013	2049	5	5	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0014	2049	5	1	2	0	0	2	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0015	2049	4	4	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0016	2049	3	3	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0017	2049	2	0	0	2	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0018	2049	2	2	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0019	2048	1	1	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0020	2049	1	1	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493