JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMPRSS11A_chr4_67904395_67968493	0/0	t0021	2049	1	1	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0022	2049	1	1	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0023	2049	1	1	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0024	2048	1	0	0	0	0	1	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0025	2049	1	1	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0026	2049	1	1	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0027	2048	1	0	0	1	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0028	2049	1	0	0	1	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0029	2049	1	0	0	1	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0030	2048	1	1	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0031	2049	1	0	1	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	t0032	2049	1	1	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11B_chr4_68221653_68250694	0/0	t0001	1397	257	27	46	145	11	28	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	1/0	t0002	1395	72	40	25	0	4	2	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/1	t0003	1398	16	1	0	13	0	1	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	t0004	1396	9	8	1	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	t0005	1396	6	5	0	0	0	1	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	t0006	1398	4	4	0	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	t0007	1396	4	4	0	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	t0008	1395	3	3	0	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	t0009	1396	2	0	0	0	0	2	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	t0010	1397	2	0	2	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	t0011	1397	1	0	0	1	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	t0012	1397	1	0	0	0	1	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	t0013	1396	1	1	0	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	t0014	1396	1	1	0	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	t0015	1397	1	0	0	1	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11D_chr4_67815876_67889002	0/1	t0001	1531	211	48	37	93	4	28	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11D_chr4_67815876_67889002	1/0	t0002	1531	89	32	8	40	0	8	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11D_chr4_67815876_67889002	0/0	t0003	1533	11	7	2	0	0	2	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11D_chr4_67815876_67889002	0/0	t0004	1531	8	7	1	0	0	0	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11D_chr4_67815876_67889002	0/0	t0005	1531	6	1	5	0	0	0	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11D_chr4_67815876_67889002	0/0	t0006	1531	4	4	0	0	0	0	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11D_chr4_67815876_67889002	0/0	t0007	1531	2	0	0	2	0	0	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11D_chr4_67815876_67889002	0/0	t0008	1531	1	0	0	0	0	1	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11D_chr4_67815876_67889002	0/0	t0009	1531	1	1	0	0	0	0	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11D_chr4_67815876_67889002	0/0	t0010	1531	1	0	0	1	0	0	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11D_chr4_67815876_67889002	0/0	t0011	1531	1	0	0	0	0	1	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11D_chr4_67815876_67889002	0/0	t0012	1531	1	0	0	0	0	1	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11D_chr4_67815876_67889002	0/0	t0013	1531	1	0	0	1	0	0	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11D_chr4_67815876_67889002	0/0	t0014	1531	1	0	0	0	0	1	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11D_chr4_67815876_67889002	0/0	t0015	1531	1	0	1	0	0	0	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11D_chr4_67815876_67889002	0/0	t0016	1531	1	0	0	1	0	0	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11E_chr4_68442463_68502604	0/0	t0001	851	226	73	29	89	7	28	copy fasta	TMPRSS11E	chr4	68442463	68502604
TMPRSS11E_chr4_68442463_68502604	0/1	t0002	851	62	11	17	18	8	7	copy fasta	TMPRSS11E	chr4	68442463	68502604
TMPRSS11E_chr4_68442463_68502604	0/0	t0003	851	29	7	14	1	3	4	copy fasta	TMPRSS11E	chr4	68442463	68502604
TMPRSS11E_chr4_68442463_68502604	0/0	t0004	851	1	1	0	0	0	0	copy fasta	TMPRSS11E	chr4	68442463	68502604
TMPRSS11E_chr4_68442463_68502604	0/0	t0005	851	1	0	0	0	0	1	copy fasta	TMPRSS11E	chr4	68442463	68502604
TMPRSS11F_chr4_68048198_68134869	0/1	t0001	761	114	24	21	53	6	9	copy fasta	TMPRSS11F	chr4	68048198	68134869
TMPRSS11F_chr4_68048198_68134869	1/0	t0002	761	112	37	23	34	6	11	copy fasta	TMPRSS11F	chr4	68048198	68134869