JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMPRSS13_chr11_117895641_117934402	0/0	t0042	1692	2	0	2	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0043	1690	2	0	0	1	0	1	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0044	1696	1	1	0	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0045	1693	1	1	0	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0046	1692	1	1	0	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0047	1694	1	0	1	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0048	1694	1	0	0	1	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0049	1694	1	0	1	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0050	1691	1	0	0	0	0	1	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0051	1690	1	0	0	1	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0052	1693	1	0	0	1	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0053	1693	1	0	0	0	0	1	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0054	1696	1	1	0	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0055	1698	1	1	0	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0056	1698	1	0	1	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0057	1695	1	1	0	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0058	1694	1	1	0	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0059	1690	1	0	0	0	1	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0060	1690	1	0	0	1	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0061	1696	1	0	0	1	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0062	1692	1	1	0	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0063	1695	1	1	0	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0064	1694	1	0	1	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0065	1696	1	1	0	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0066	1691	1	0	0	1	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0067	1693	1	0	0	1	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0068	1692	1	0	1	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	t0069	1693	1	0	0	1	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS15_chr21_18264116_18408785	1/0	t0001	1017	221	32	45	102	12	29	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/1	t0002	1017	44	27	6	4	1	5	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	t0003	1017	9	8	1	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	t0004	1017	8	8	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	t0005	1017	6	0	0	6	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	t0006	1017	5	5	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	t0007	1017	5	5	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	t0008	1017	4	4	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	t0009	1017	3	1	1	1	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	t0010	1017	2	0	0	2	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	t0011	1017	1	0	1	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	t0012	1017	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	t0013	1017	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	t0014	1017	1	0	1	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	t0015	1017	1	0	1	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	t0016	1017	1	0	0	1	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	t0017	1017	1	0	0	0	1	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS2_chr21_41459305_41513158	0/0	t0001	1972	192	48	43	63	8	30	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	1/0	t0002	1972	62	5	13	37	0	6	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0003	1972	28	0	0	23	0	5	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0004	1971	25	5	6	8	3	3	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0005	1971	17	14	3	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158