JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMPRSS2_chr21_41459305_41513158	0/0	t0006	1972	16	5	0	11	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0007	1971	7	5	2	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0008	1972	6	1	4	0	1	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0009	1971	5	4	1	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0010	1972	5	4	1	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0011	1972	4	0	0	4	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0012	1972	4	4	0	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0013	1972	1	0	0	1	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0014	1971	1	1	0	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0015	1971	1	1	0	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0016	1972	1	0	0	0	0	1	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0017	1972	1	0	0	1	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0018	1972	1	0	1	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0019	1972	1	1	0	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0020	1972	1	0	0	1	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0021	1972	1	0	0	1	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	t0022	1972	1	0	0	0	0	1	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/1	t0023	1972	1	0	0	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS3_chr21_42366890_42401052	0/0	t0001	1035	163	4	16	122	3	18	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	1/0	t0002	1035	148	50	27	43	7	20	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/1	t0003	1034	68	10	35	4	8	10	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0004	1035	44	0	0	44	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0005	1035	16	14	2	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0006	1035	12	10	2	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0007	1035	6	4	2	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0008	1035	3	3	0	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0009	1035	2	0	0	2	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0010	1035	1	0	0	1	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0011	1035	1	1	0	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0012	1035	1	0	1	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0013	1035	1	1	0	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0014	1034	1	1	0	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0015	1035	1	0	1	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0016	1035	1	0	0	1	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0017	1034	1	0	0	1	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0018	1035	1	1	0	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	t0019	1035	1	1	0	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS4_chr11_118072078_118126890	0/0	t0001	4202	78	12	19	33	3	11	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0002	4196	70	0	4	47	3	16	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0003	4196	54	20	7	26	0	1	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0004	4196	50	3	22	16	5	4	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0005	4197	32	0	5	21	1	5	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0006	4196	16	0	0	16	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/1	t0007	4196	12	0	6	0	3	2	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0008	4197	12	11	1	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0009	4203	9	7	1	1	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0010	4209	8	8	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0011	4193	7	7	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0012	4202	5	5	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0013	4196	4	0	3	0	0	1	copy fasta	TMPRSS4	chr11	118072078	118126890