JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMPRSS4_chr11_118072078_118126890	0/0	t0014	4197	3	3	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	1/0	t0015	4203	3	0	2	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0016	4199	3	0	0	1	0	2	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0017	4196	3	3	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0018	4199	2	0	2	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0019	4208	2	0	0	2	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0020	4203	2	0	1	0	0	1	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0021	4196	2	0	1	0	0	1	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0022	4193	2	2	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0023	4197	2	0	0	2	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0024	4206	1	1	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0025	4196	1	1	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0026	4196	1	0	1	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0027	4196	1	1	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0028	4197	1	1	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0029	4202	1	1	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0030	4206	1	1	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0031	4196	1	0	0	0	0	1	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0032	4196	1	1	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0033	4202	1	0	0	1	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0034	4202	1	0	1	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0035	4196	1	0	0	1	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0036	4206	1	1	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0037	4205	1	1	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0038	4202	1	0	1	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0039	4196	1	0	0	1	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0040	4196	1	0	0	1	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0041	4196	1	0	0	0	0	1	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0042	4196	1	0	0	0	1	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0043	4196	1	0	0	1	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0044	4197	1	0	1	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0045	4202	1	1	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0046	4199	1	1	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0047	4196	1	1	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	t0048	4197	1	1	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS5_chr11_113682550_113711308	1/0	t0001	795	366	60	63	197	9	36	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/1	t0002	795	33	15	13	0	1	3	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	t0003	784	10	10	0	0	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	t0004	795	6	6	0	0	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	t0005	795	5	4	1	0	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	t0006	795	1	0	0	1	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	t0007	795	1	1	0	0	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	t0008	795	1	0	0	0	0	1	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	t0009	795	1	0	0	1	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	t0010	795	1	0	0	1	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	t0011	795	1	0	1	0	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS6_chr22_37060436_37114713	0/1	t0001	856	284	75	48	116	14	30	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	1/0	t0002	856	23	2	15	0	2	3	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	t0003	856	10	0	9	1	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	t0004	856	7	0	0	7	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713