JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMPRSS6_chr22_37060436_37114713	0/0	t0005	856	6	2	1	0	0	3	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	t0006	856	5	4	1	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	t0007	856	5	5	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	t0008	856	3	0	0	3	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	t0009	856	2	2	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	t0010	856	1	1	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	t0011	856	1	0	0	1	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	t0012	856	1	1	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS7_chr3_112029736_112086269	1/1	t0001	296	347	89	72	135	14	35	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	t0002	296	31	0	5	22	0	4	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	t0003	296	16	2	1	9	0	4	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	t0004	297	15	3	0	11	0	1	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	t0005	297	4	0	0	2	0	2	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	t0006	296	2	0	0	0	0	2	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	t0007	296	2	1	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	t0008	296	1	0	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	t0009	296	1	0	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	t0010	296	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS9_chr19_2355265_2431261	1/1	t0001	295	64	7	15	17	8	15	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	t0002	334	30	11	8	5	2	4	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	t0003	334	19	4	3	9	0	3	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	t0004	295	1	0	0	1	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMSB10_chr2_84900656_84911671	1/1	t0001	327	315	63	68	124	18	40	copy fasta	TMSB10	chr2	84900656	84911671
TMSB10_chr2_84900656_84911671	0/0	t0002	328	39	23	6	8	0	2	copy fasta	TMSB10	chr2	84900656	84911671
TMSB10_chr2_84900656_84911671	0/0	t0003	328	1	1	0	0	0	0	copy fasta	TMSB10	chr2	84900656	84911671
TMSB10_chr2_84900656_84911671	0/0	t0004	327	1	1	0	0	0	0	copy fasta	TMSB10	chr2	84900656	84911671
TMSB15A_chrX_102508682_102521739	1/1	t0001	497	287	77	47	118	13	30	copy fasta	TMSB15A	chrX	102508682	102521739
TMSB15A_chrX_102508682_102521739	0/0	t0002	497	2	0	0	2	0	0	copy fasta	TMSB15A	chrX	102508682	102521739
TMSB15A_chrX_102508682_102521739	0/0	t0003	497	1	1	0	0	0	0	copy fasta	TMSB15A	chrX	102508682	102521739
TMSB15A_chrX_102508682_102521739	0/0	t0004	497	1	0	0	1	0	0	copy fasta	TMSB15A	chrX	102508682	102521739
TMSB15B_chrX_103957627_103970976	0/1	t0001	515	262	69	48	112	10	22	copy fasta	TMSB15B	chrX	103957627	103970976
TMSB15B_chrX_103957627_103970976	0/0	t0002	515	2	0	0	2	0	0	copy fasta	TMSB15B	chrX	103957627	103970976
TMSB15B_chrX_103957627_103970976	0/0	t0003	514	1	0	0	1	0	0	copy fasta	TMSB15B	chrX	103957627	103970976
TMSB15B_chrX_103957627_103970976	0/0	t0004	515	1	0	0	0	1	0	copy fasta	TMSB15B	chrX	103957627	103970976
TMSB15B_chrX_103957627_103970976	0/0	t0005	504	1	0	0	0	0	1	copy fasta	TMSB15B	chrX	103957627	103970976
TMSB15B_chrX_103957627_103970976	0/0	t0006	514	1	0	0	1	0	0	copy fasta	TMSB15B	chrX	103957627	103970976
TMSB15C_chrX_104067887_104081236	0/0	t0001	515	89	19	16	42	2	10	copy fasta	TMSB15C	chrX	104067887	104081236
TMSB15C_chrX_104067887_104081236	0/0	t0002	514	1	0	0	0	1	0	copy fasta	TMSB15C	chrX	104067887	104081236
TMSB15C_chrX_104067887_104081236	0/0	t0003	516	1	0	0	1	0	0	copy fasta	TMSB15C	chrX	104067887	104081236
TMSB15C_chrX_104067887_104081236	0/0	t0004	515	1	0	0	0	1	0	copy fasta	TMSB15C	chrX	104067887	104081236
TMSB15C_chrX_104067887_104081236	0/0	t0005	512	1	0	0	1	0	0	copy fasta	TMSB15C	chrX	104067887	104081236
TMSB15C_chrX_104067887_104081236	0/0	t0006	515	1	0	0	1	0	0	copy fasta	TMSB15C	chrX	104067887	104081236
TMSB4X_chrX_12970110_12982223	1/1	t0001	488	264	64	42	121	9	26	copy fasta	TMSB4X	chrX	12970110	12982223
TMSB4X_chrX_12970110_12982223	0/0	t0002	488	18	4	6	0	3	5	copy fasta	TMSB4X	chrX	12970110	12982223
TMSB4X_chrX_12970110_12982223	0/0	t0003	488	9	0	7	0	1	1	copy fasta	TMSB4X	chrX	12970110	12982223
TMSB4X_chrX_12970110_12982223	0/0	t0004	488	5	0	0	5	0	0	copy fasta	TMSB4X	chrX	12970110	12982223
TMSB4X_chrX_12970110_12982223	0/0	t0005	488	5	0	0	5	0	0	copy fasta	TMSB4X	chrX	12970110	12982223
TMSB4X_chrX_12970110_12982223	0/0	t0006	487	1	0	1	0	0	0	copy fasta	TMSB4X	chrX	12970110	12982223
TMSB4X_chrX_12970110_12982223	0/0	t0007	489	1	1	0	0	0	0	copy fasta	TMSB4X	chrX	12970110	12982223
TMSB4X_chrX_12970110_12982223	0/0	t0008	488	1	1	0	0	0	0	copy fasta	TMSB4X	chrX	12970110	12982223