JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMSB4X_chrX_12970110_12982223	0/0	t0009	474	1	1	0	0	0	0	copy fasta	TMSB4X	chrX	12970110	12982223
TMSB4X_chrX_12970110_12982223	0/0	t0010	488	1	1	0	0	0	0	copy fasta	TMSB4X	chrX	12970110	12982223
TMSB4Y_chrY_13698899_13711024	1/1	t0001	1203	128	18	20	67	5	16	copy fasta	TMSB4Y	chrY	13698899	13711024
TMSB4Y_chrY_13698899_13711024	0/0	t0002	1203	4	0	0	4	0	0	copy fasta	TMSB4Y	chrY	13698899	13711024
TMT1A_chr12_50920015_50937508	1/0	t0001	2383	165	27	35	79	9	14	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/1	t0002	2381	118	8	13	80	3	13	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0003	2382	38	4	5	18	3	8	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0004	2384	13	1	6	5	0	1	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0005	2383	12	9	0	0	1	2	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0006	2384	10	3	1	6	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0007	2383	9	8	1	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0008	2382	6	0	0	5	0	1	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0009	2380	5	2	0	3	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0010	2382	5	0	1	4	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0011	2369	4	2	2	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0012	2382	3	2	0	0	0	1	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0013	2382	3	0	1	2	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0014	2383	3	3	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0015	2382	3	1	1	1	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0016	2382	2	0	1	0	0	1	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0017	2381	2	0	0	2	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0018	2383	2	0	2	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0019	2381	2	0	0	1	0	1	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0020	2384	2	0	0	2	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0021	2384	2	2	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0022	2383	2	1	0	1	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0023	2383	2	1	0	1	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0024	2386	2	2	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0025	2383	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0026	2383	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0027	2382	1	0	1	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0028	2383	1	0	1	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0029	2382	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0030	2383	1	0	1	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0031	2382	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0032	2382	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0033	2382	1	0	0	1	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0034	2381	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0035	2381	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0036	2370	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0037	2375	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0038	2381	1	0	1	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0039	2383	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0040	2383	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0041	2370	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0042	2383	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0043	2383	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0044	2383	1	0	0	1	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0045	2381	1	0	0	1	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0046	2381	1	0	0	0	0	1	copy fasta	TMT1A	chr12	50920015	50937508