JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMT1A_chr12_50920015_50937508	0/0	t0047	2383	1	0	0	0	0	1	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0048	2381	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0049	2383	1	0	0	1	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0050	2381	1	0	0	0	0	1	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0051	2382	1	0	0	1	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0052	2384	1	0	0	1	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0053	2385	1	0	0	0	0	1	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0054	2384	1	1	0	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	t0055	2381	1	0	1	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1B_chr12_55676736_55689611	0/1	t0001	582	277	18	36	185	6	31	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	1/0	t0002	582	71	14	27	15	6	8	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	t0003	582	63	33	19	2	5	4	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	t0004	582	9	9	0	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	t0005	582	8	8	0	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	t0006	582	7	4	0	1	1	1	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	t0007	582	5	5	0	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	t0008	582	3	3	0	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	t0009	582	3	3	0	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	t0010	582	2	2	0	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	t0011	582	1	0	0	1	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	t0012	582	1	1	0	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMTC1_chr12_29495840_29788942	1/0	t0001	6198	25	8	1	6	5	4	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0002	6198	23	3	4	11	2	3	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0003	6201	18	4	1	11	0	2	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0004	6197	14	0	2	10	0	2	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0005	6200	9	0	1	6	1	1	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0006	6200	9	5	4	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0007	6198	9	0	3	5	1	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0008	6197	8	0	0	6	1	1	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0009	6198	7	0	1	0	1	5	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0010	6198	7	7	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0011	6198	6	0	0	6	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0012	6201	6	2	0	3	0	1	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0013	6200	5	4	1	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0014	6198	5	1	4	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0015	6201	5	0	0	5	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0016	6200	5	0	0	5	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/1	t0017	6198	5	0	1	2	0	1	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0018	6200	4	4	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0019	6199	3	3	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0020	6198	3	0	0	3	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0021	6200	3	3	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0022	6202	3	0	3	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0023	6201	2	2	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0024	6200	2	2	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0025	6201	2	2	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0026	6200	2	1	1	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0027	6200	2	2	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0028	6198	2	2	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0029	6200	2	0	2	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942