JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMTC1_chr12_29495840_29788942	0/0	t0080	6201	1	0	1	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0081	6198	1	1	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0082	6199	1	1	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0083	6198	1	0	0	1	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0084	6201	1	0	0	1	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0085	6198	1	0	1	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0086	6201	1	0	0	1	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0087	6198	1	1	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0088	6200	1	0	0	0	1	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0089	6198	1	1	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0090	6201	1	0	0	1	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0091	6201	1	0	1	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0092	6197	1	0	0	1	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0093	6200	1	0	0	1	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0094	6201	1	0	0	0	0	1	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0095	6202	1	0	1	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0096	6197	1	0	1	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0097	6197	1	0	0	1	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	t0098	6198	1	0	1	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC2_chr12_82681906_83139866	0/0	t0001	3159	18	8	7	1	1	1	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0002	3159	16	7	2	1	1	5	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0003	3159	11	8	3	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	1/0	t0004	3159	6	0	2	0	0	3	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0005	3159	5	5	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0006	3159	3	3	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0007	3156	3	3	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0008	3159	3	2	0	0	1	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0009	3153	2	0	2	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0010	3159	2	2	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0011	3159	2	2	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0012	3159	2	1	0	0	0	1	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0013	3159	2	0	1	1	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/1	t0014	3153	1	0	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0015	3153	1	0	0	0	1	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0016	3159	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0017	3159	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0018	3158	1	0	1	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0019	3159	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0020	3159	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0021	3159	1	0	1	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0022	3159	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0023	3160	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0024	3160	1	0	1	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0025	3159	1	0	1	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0026	3158	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0027	3159	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0028	3159	1	0	1	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0029	3160	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0030	3159	1	0	1	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0031	3159	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866