JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMTC2_chr12_82681906_83139866	0/0	t0032	3159	1	0	1	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0033	3171	1	0	0	1	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	t0034	3159	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC3_chr12_88137307_88204887	0/1	t0001	4452	82	19	16	33	4	9	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0002	4451	40	1	7	28	0	4	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0003	4455	14	12	2	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0004	4445	14	14	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0005	4446	12	8	2	1	0	1	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0006	4452	11	0	5	2	2	2	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0007	4453	10	4	1	4	0	1	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0008	4449	10	1	0	9	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0009	4452	4	4	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0010	4456	4	3	1	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0011	4453	4	0	2	0	0	2	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0012	4453	3	3	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0013	4447	3	3	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0014	4451	2	0	0	2	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0015	4448	2	2	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0016	4451	2	0	0	2	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0017	4452	2	1	1	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0018	4445	2	2	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0019	4452	1	0	0	0	1	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0020	4453	1	1	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0021	4452	1	0	0	0	0	1	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0022	4449	1	1	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0023	4455	1	1	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0024	4452	1	0	0	0	0	1	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0025	4452	1	0	0	1	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	1/0	t0026	4448	1	0	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0027	4452	1	1	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0028	4452	1	0	0	1	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0029	4451	1	0	0	1	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0030	4452	1	0	0	0	1	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0031	4454	1	1	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0032	4454	1	1	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0033	4451	1	0	1	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0034	4445	1	1	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0035	4446	1	1	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0036	4446	1	0	0	0	0	1	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0037	4445	1	1	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0038	4447	1	1	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	t0039	4445	1	1	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC4_chr13_100598625_100679795	0/0	t0001	1629	156	36	41	53	7	19	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/1	t0002	1629	111	25	10	56	4	15	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	1/0	t0003	1629	40	11	10	10	5	3	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	t0004	1629	9	5	0	4	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	t0005	1629	7	0	0	5	0	2	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	t0006	1629	5	5	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	t0007	1629	4	4	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	t0008	1629	3	3	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795