JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TMTC4_chr13_100598625_100679795	0/0	t0009	1629	2	0	0	1	0	1	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	t0010	1629	2	2	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	t0011	1629	1	1	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	t0012	1629	1	0	1	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	t0013	1629	1	1	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	t0014	1629	1	0	1	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	t0015	1629	1	0	1	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	t0016	1629	1	0	0	1	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	t0017	1629	1	1	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMUB1_chr7_151076085_151088493	0/0	t0001	555	199	58	41	72	7	21	copy fasta	TMUB1	chr7	151076085	151088493
TMUB1_chr7_151076085_151088493	0/1	t0002	555	136	25	21	63	9	17	copy fasta	TMUB1	chr7	151076085	151088493
TMUB1_chr7_151076085_151088493	0/0	t0003	555	49	0	2	47	0	0	copy fasta	TMUB1	chr7	151076085	151088493
TMUB1_chr7_151076085_151088493	0/0	t0004	555	8	8	0	0	0	0	copy fasta	TMUB1	chr7	151076085	151088493
TMUB1_chr7_151076085_151088493	1/0	t0005	555	6	0	2	0	2	1	copy fasta	TMUB1	chr7	151076085	151088493
TMUB1_chr7_151076085_151088493	0/0	t0006	555	3	3	0	0	0	0	copy fasta	TMUB1	chr7	151076085	151088493
TMUB1_chr7_151076085_151088493	0/0	t0007	555	2	0	0	2	0	0	copy fasta	TMUB1	chr7	151076085	151088493
TMUB1_chr7_151076085_151088493	0/0	t0008	575	1	0	0	0	0	1	copy fasta	TMUB1	chr7	151076085	151088493
TMUB2_chr17_44181972_44196929	0/0	t0001	1237	187	76	25	75	3	8	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/1	t0002	1237	122	6	27	53	9	26	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	t0003	1237	31	7	5	18	0	1	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	1/0	t0004	1237	11	0	6	0	1	3	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	t0005	1234	4	0	3	0	1	0	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	t0006	1237	2	2	0	0	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	t0007	1237	1	0	0	1	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	t0008	1237	1	0	0	1	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	t0009	1237	1	1	0	0	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMX1_chr14_51235247_51262655	0/0	t0001	3178	106	1	13	80	2	10	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0002	3183	79	1	12	57	1	8	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0003	3183	62	9	17	22	5	9	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/1	t0004	3178	61	30	17	4	1	8	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	1/0	t0005	3183	43	24	6	5	3	4	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0006	3184	19	3	1	14	0	1	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0007	3178	9	1	4	1	2	1	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0008	3183	8	8	0	0	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0009	3183	6	6	0	0	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0010	3183	5	5	0	0	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0011	3183	4	4	0	0	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0012	3179	2	0	0	2	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0013	3183	2	2	0	0	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0014	3184	2	2	0	0	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0015	3185	2	0	0	2	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0016	3183	1	0	1	0	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0017	3183	1	0	1	0	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0018	3179	1	0	1	0	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0019	3178	1	0	1	0	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0020	3178	1	0	0	0	1	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0021	3178	1	0	0	1	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0022	3183	1	0	0	1	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0023	3183	1	0	0	1	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	t0024	3184	1	1	0	0	0	0	copy fasta	TMX1	chr14	51235247	51262655