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deepTMHMM Topology Viewer — ABCA1 ABCA1_chr9_104776006_104933155

Per-haplotype transmembrane topology predictions from JoGo haplotype-resolved proteome (deepTMHMM)

Gene Information ▼
Gene SymbolABCA1
Gene NameATP binding cassette subfamily A member 1
NCBI Gene IDGeneID:19
EnsemblENSG00000165029.17
HGNCHGNC:29
RefSeq ProteinNP_005493.2
Protein Length (ref)2261 aa
Haplotypes38
TM Helices (ref)12
Distinct Topologies1
Ref (a0001) TopologyTMhelix(22-42)->TMhelix(632-652)->TMhelix(685-706)->TMhelix(724-736)->TMhelix(745-765)->TMhelix(821-841)->TMhelix(1351-1371)->TMhelix(1703-1723)->TMhelix(1735-1755)->TMhelix(1768-1788)->TMhelix(1806-1820)->TMhelix(1848-1868)
Genomic Regionchr9: 104776006-104933155
Topology Architecture Diagram ▼
Topology Differences vs Reference (a0001) ▼
Haplotype ▲▼ Diff Type ▲▼ Detail ▲▼
Haplotype Topology Details ▼
Summary Statistics ▼