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deepTMHMM Topology Viewer — PKD1 PKD1_chr16_2083708_2140898

Per-haplotype transmembrane topology predictions from JoGo haplotype-resolved proteome (deepTMHMM)

Gene Information ▼
Gene SymbolPKD1
Gene Namepolycystin 1, transient receptor potential channel interacting
NCBI Gene IDGeneID:5310
EnsemblENSG00000008710.20
HGNCHGNC:9008
RefSeq ProteinNP_001009944.3
Protein Length (ref)4303 aa
Haplotypes75
TM Helices (ref)11
Distinct Topologies5
Ref (a0001) Topologysignal(1-23)->TMhelix(3075-3095)->TMhelix(3281-3302)->TMhelix(3323-3344)->TMhelix(3557-3578)->TMhelix(3584-3602)->TMhelix(3674-3694)->TMhelix(3897-3917)->TMhelix(3936-3956)->TMhelix(3986-4003)->TMhelix(4026-4046)->TMhelix(4085-4105)
Genomic Regionchr16: 2083708-2140898
Topology Architecture Diagram ▼
Topology Differences vs Reference (a0001) ▼
Haplotype ▲▼ Diff Type ▲▼ Detail ▲▼
Haplotype Topology Details ▼
Summary Statistics ▼