deepTMHMM Topology Viewer

Per-haplotype transmembrane topology predictions from JoGo haplotype-resolved proteome (deepTMHMM)

Gene Information ▼

Gene SymbolSCN1A

Gene Namesodium voltage-gated channel alpha subunit 1

NCBI Gene IDGeneID:6323

EnsemblENSG00000144285.23

HGNCHGNC:10585

RefSeq ProteinNP_001159435.1

Protein Length (ref)2009 aa

Haplotypes11

TM Helices (ref)22

Distinct Topologies2

Ref (a0001) TopologyTMhelix(129-147)->TMhelix(161-174)->TMhelix(192-207)->TMhelix(209-218)->TMhelix(250-270)->TMhelix(400-418)->TMhelix(769-787)->TMhelix(799-810)->TMhelix(812-822)->TMhelix(837-852)->TMhelix(890-909)->TMhelix(970-987)->TMhelix(1219-1237)->TMhelix(1258-1273)->TMhelix(1347-1364)->TMhelix(1460-1480)->TMhelix(1542-1560)->TMhelix(1572-1582)->TMhelix(1584-1593)->TMhelix(1606-1622)->TMhelix(1669-1689)->TMhelix(1761-1781)

Genomic Regionchr2: 165980813-166133020

deepTMHMM Topology Viewer — SCN1A SCN1A_chr2_165980813_166133020