Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Sampleids

Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PIK3C2G_chr12_18256518_18653416	18650323	CTCTCTCT others(3): Show CTCTCTCTCTA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00558.hp1 HG00558.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0039 a0002c0003t0001g0039	1	176	0.0057	-10	c.22 others(21): Show c.2296_*2305delTCTCTCTCTA	PIK3C2G	ENSG00000139144.11	transcript	ENST00000538779.6	protein_coding		1908		chr12	TogoVar
PIK3C2G_chr12_18256518_18653416	18650347	ATGTGTGT others(3): Show ATGTGTGTGTG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03688.hp1 HG06807.hp1 HG03688.hp1 HG06807.hp1	a0002 a0011 a0002 a0011	a0002c0003 a0011c0018 a0002c0003 a0011c0018	a0002c0003t0004 a0011c0018t0003 a0002c0003t0004 a0011c0018t0003	a0002c0003t0004g0168 a0011c0018t0003g0117 a0002c0003t0004g0168 a0011c0018t0003g0117	2	176	0.0114	-10	c.23 others(21): Show c.2320_*2329delTGTGTGTGTG	PIK3C2G	ENSG00000139144.11	transcript	ENST00000538779.6	protein_coding		1932		chr12	TogoVar
PIK3C2G_chr12_18256518_18653416	18650664	ATGTGTGT others(3): Show ATGTGTGTGTG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00621.hp1 HG00621.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0026 a0001c0001t0001g0026	1	176	0.0057	-10	c.26 others(21): Show c.2637_*2646delTGTGTGTGTG	PIK3C2G	ENSG00000139144.11	transcript	ENST00000538779.6	protein_coding		2249		chr12	TogoVar
PIK3C2G_chr12_18256518_18653416	18650702	GTGTATAT others(3): Show GTGTATATATC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02922.hp2 NA18954.hp2 HG02922.hp2 NA18954.hp2	a0001 a0003 a0001 a0003	a0001c0008 a0003c0002 a0001c0008 a0003c0002	a0001c0008t0001 a0003c0002t0001 a0001c0008t0001 a0003c0002t0001	a0001c0008t0001g0074 a0003c0002t0001g0135 a0001c0008t0001g0074 a0003c0002t0001g0135	2	176	0.0114	-10	c.26 others(21): Show c.2675_*2684delTGTATATATC	PIK3C2G	ENSG00000139144.11	transcript	ENST00000538779.6	protein_coding		2287		chr12	TogoVar
PIK3C2G_chr12_18256518_18653416	18650704	GTATATAT others(3): Show GTATATATCTA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0008 a0008	a0008c0047 a0008c0047	a0008c0047t0002 a0008c0047t0002	a0008c0047t0002g0079 a0008c0047t0002g0079	1	176	0.0057	-10	c.26 others(21): Show c.2677_*2686delTATATATCTA	PIK3C2G	ENSG00000139144.11	transcript	ENST00000538779.6	protein_coding		2289		chr12	TogoVar
PIK3C3_chr18_41950234_42092830	42054126	GTATATAT others(3): Show GTATATATATA	G G	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01099.hp2 HG01243.hp1 others(14): Show HG01069.hp2 HG01099.hp2 HG01243.hp1 HG01346.hp1 HG01978.hp1 HG02004.hp2 HG02071.hp1 HG02630.hp2 HG02647.hp1 HG03239.hp2 HG03453.hp2 NA18954.hp2 NA18960.hp1 NA18971.hp2 NA18999.hp2 NA19005.hp2 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 others(7): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0008 a0001c0001t0013 a0001c0001t0018 a0001c0001t0022 a0001c0001t0031 a0001c0003t0003 a0001c0003t0004	a0001c0001t0002g0255 a0001c0001t0002g0267 a0001c0001t0002g0273 others(14): Show a0001c0001t0002g0255 a0001c0001t0002g0267 a0001c0001t0002g0273 a0001c0001t0002g0286 a0001c0001t0003g0088 a0001c0001t0003g0089 a0001c0001t0007g0247 a0001c0001t0007g0252 a0001c0001t0008g0325 a0001c0001t0013g0040 a0001c0001t0013g0042 a0001c0001t0018g0097 a0001c0001t0022g0296 a0001c0001t0031g0095 a0001c0001t0031g0096 a0001c0003t0003g0317 a0001c0003t0004g0313	17	340	0.0500	-10	c.226 others(29): Show c.2264-3700_2264-3691delTATATATATA	PIK3C3	ENSG00000078142.14	transcript	ENST00000262039.9	protein_coding	21/24		INFO_REALIGN_3_PRIME	chr18	TogoVar
PIK3C3_chr18_41950234_42092830	42076187	TATATGCA others(3): Show TATATGCACAC	T T	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0010 a0001c0001t0020g0010	1	340	0.0029	-10	c.265 others(29): Show c.2650-4931_2650-4922delGCACACATAT	PIK3C3	ENSG00000078142.14	transcript	ENST00000262039.9	protein_coding	24/24		INFO_REALIGN_3_PRIME	chr18	TogoVar
PIK3C3_chr18_41950234_42092830	42079946	AGTGTGTG others(3): Show AGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01433.hp2 HG01891.hp1 others(4): Show HG01243.hp1 HG01433.hp2 HG01891.hp1 HG02615.hp1 HG02723.hp2 HG03139.hp1 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0007 a0001c0001t0058 a0001c0001t0002 a0001c0001t0007 a0001c0001t0058	a0001c0001t0002g0245 a0001c0001t0002g0246 a0001c0001t0002g0292 others(4): Show a0001c0001t0002g0245 a0001c0001t0002g0246 a0001c0001t0002g0292 a0001c0001t0007g0247 a0001c0001t0007g0252 a0001c0001t0007g0304 a0001c0001t0058g0104	7	340	0.0206	-10	c.265 others(29): Show c.2650-1148_2650-1139delGTGTGTGTGT	PIK3C3	ENSG00000078142.14	transcript	ENST00000262039.9	protein_coding	24/24		INFO_REALIGN_3_PRIME	chr18	TogoVar
PIK3C3_chr18_41950234_42092830	42079979	GTGTGTAT others(3): Show GTGTGTATGTA	G G	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01261.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0149 a0001c0001t0010g0149	1	340	0.0029	-10	c.265 others(29): Show c.2650-1143_2650-1134delTGTGTATGTA	PIK3C3	ENSG00000078142.14	transcript	ENST00000262039.9	protein_coding	24/24			chr18	TogoVar
PIK3CB_chr3_138647698_138839928	138685396	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02897.hp2 HG02897.hp2	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0003 a0003c0006t0003	a0003c0006t0003g0001 a0003c0006t0003g0001	1	206	0.0049	-10	c.213 others(27): Show c.2137-603_2137-594delTTTTTTTTTT	PIK3CB	ENSG00000051382.9	transcript	ENST00000674063.1	protein_coding	16/23			chr3	TogoVar
PIK3CB_chr3_138647698_138839928	138705180	ACAAAACA others(3): Show ACAAAACAAAC	A A	intron_variant intron_variant	MODIFIER	HG01884.hp2 NA20905.hp1 homoSapiens_chm13v2.hp1 HG01884.hp2 NA20905.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0020 a0001c0001t0001g0151 a0001c0001t0001g0009 a0001c0001t0001g0020 a0001c0001t0001g0151	3	206	0.0146	-10	c.153 others(27): Show c.1531-697_1531-688delGTTTGTTTTG	PIK3CB	ENSG00000051382.9	transcript	ENST00000674063.1	protein_coding	11/23			chr3	TogoVar
PIK3CB_chr3_138647698_138839928	138722221	GACACACA others(3): Show GACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0205 a0001c0001t0003g0205	1	206	0.0049	-10	c.105 others(29): Show c.1051-7512_1051-7503delGTGTGTGTGT	PIK3CB	ENSG00000051382.9	transcript	ENST00000674063.1	protein_coding	8/23			chr3	TogoVar
PIK3CB_chr3_138647698_138839928	138744392	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG04184.hp2 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0115 a0001c0001t0002g0115	1	206	0.0049	-10	c.398 others(27): Show c.398-1621_398-1612delTTTTTTTTTT	PIK3CB	ENSG00000051382.9	transcript	ENST00000674063.1	protein_coding	4/23			chr3	TogoVar
PIK3CB_chr3_138647698_138839928	138747054	TTATATAT others(3): Show TTATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01358.hp1 HG01891.hp2 others(7): Show HG00735.hp2 HG01358.hp1 HG01891.hp2 HG02922.hp2 HG03017.hp1 HG03130.hp2 HG03139.hp2 HG04184.hp2 NA20905.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0002t0003	a0001c0001t0001g0155 a0001c0001t0001g0161 a0001c0001t0002g0075 others(7): Show a0001c0001t0001g0155 a0001c0001t0001g0161 a0001c0001t0002g0075 a0001c0001t0002g0076 a0001c0001t0002g0081 a0001c0001t0002g0111 a0001c0001t0002g0115 a0001c0001t0002g0124 a0001c0001t0004g0043 a0001c0002t0003g0052	10	206	0.0485	-10	c.398 others(27): Show c.398-4283_398-4274delTATATATATA	PIK3CB	ENSG00000051382.9	transcript	ENST00000674063.1	protein_coding	4/23			chr3	TogoVar
PIK3CB_chr3_138647698_138839928	138788964	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG03471.hp2 HG02630.hp2 HG03471.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0051 a0001c0002t0003g0057 a0001c0002t0003g0051 a0001c0002t0003g0057	2	206	0.0097	-10	c.-17 others(27): Show c.-17+7489_-17+7498delTTTTTTTTTT	PIK3CB	ENSG00000051382.9	transcript	ENST00000674063.1	protein_coding	2/23			chr3	TogoVar
PIK3CB_chr3_138647698_138839928	138790841	GAGTCCCA others(3): Show GAGTCCCAGCT	G G	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01433.hp2 HG02897.hp2 others(1): Show HG00741.hp1 HG01433.hp2 HG02897.hp2 HG03098.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0006 a0001c0001 a0003c0006	a0001c0001t0003 a0003c0006t0003 a0001c0001t0003 a0003c0006t0003	a0001c0001t0003g0044 a0001c0001t0003g0045 a0001c0001t0003g0141 others(1): Show a0001c0001t0003g0044 a0001c0001t0003g0045 a0001c0001t0003g0141 a0003c0006t0003g0001	4	206	0.0194	-10	c.-17 others(27): Show c.-17+5612_-17+5621delAGCTGGGACT	PIK3CB	ENSG00000051382.9	transcript	ENST00000674063.1	protein_coding	2/23			chr3	TogoVar
PIK3CB_chr3_138647698_138839928	138794997	TGACAGAC others(3): Show TGACAGACTGA	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG03041.hp1 HG03540.hp2 others(1): Show HG01884.hp1 HG03041.hp1 HG03540.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0003 a0001c0001t0003g0005 a0001c0001t0003g0006 others(1): Show a0001c0001t0003g0003 a0001c0001t0003g0005 a0001c0001t0003g0006 a0001c0001t0003g0007	4	206	0.0194	-10	c.-17 others(27): Show c.-17+1456_-17+1465delTCAGTCTGTC	PIK3CB	ENSG00000051382.9	transcript	ENST00000674063.1	protein_coding	2/23			chr3	TogoVar
PIK3CD_chr1_9646731_9734114	9699053	CTGCACAG others(3): Show CTGCACAGTGA	C C	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00280.hp2	a0008 a0008	a0008c0013 a0008c0013	a0008c0013t0002 a0008c0013t0002	a0008c0013t0002g0261 a0008c0013t0002g0261	1	318	0.0031	-10	c.-33 others(27): Show c.-33+7492_-33+7501delATGCACAGTG	PIK3CD	ENSG00000171608.18	transcript	ENST00000377346.9	protein_coding	2/23		INFO_REALIGN_3_PRIME	chr1	TogoVar
PIK3CD_chr1_9646731_9734114	9702500	CTTTTTTT others(3): Show CTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG06807.hp1 HG02109.hp2 HG06807.hp1	a0001 a0001	a0001c0009 a0001c0012 a0001c0009 a0001c0012	a0001c0009t0002 a0001c0012t0011 a0001c0009t0002 a0001c0012t0011	a0001c0009t0002g0212 a0001c0012t0011g0269 a0001c0009t0002g0212 a0001c0012t0011g0269	2	318	0.0063	-10	c.-32 others(27): Show c.-32-7896_-32-7887delTTTTTTTTTT	PIK3CD	ENSG00000171608.18	transcript	ENST00000377346.9	protein_coding	2/23		INFO_REALIGN_3_PRIME	chr1	TogoVar
PIK3CD_chr1_9646731_9734114	9710632	CAGAGAGA others(3): Show CAGAGAGAGAG	C C	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0026 a0001c0001t0001g0026	1	318	0.0031	-10	c.141 others(23): Show c.141+50_141+59delGAGAGAGAGA	PIK3CD	ENSG00000171608.18	transcript	ENST00000377346.9	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr1	TogoVar
PIK3CG_chr7_106860282_106913980	106913530	ATTTGGTT others(3): Show ATTTGGTTTGG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00621.hp1 HG00621.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0017	1	378	0.0027	-10	c.81 others(21): Show c.8144_*8153delTTTGGTTTGG	PIK3CG	ENSG00000105851.11	transcript	ENST00000496166.6	protein_coding		4551		chr7	TogoVar
PIK3IP1_chr22_31276600_31297488	31293414	TTAAAAAA others(3): Show TTAAAAAAAAA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01952.hp2 HG02809.hp2 HG03831.hp2 HG01952.hp2 HG02809.hp2 HG03831.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0013 a0001c0001t0001 a0001c0001t0013	a0001c0001t0001g0019 a0001c0001t0013g0081 a0001c0001t0001g0019 a0001c0001t0013g0081	3	422	0.0071	-10	c.-10 others(21): Show c.-1080_-1071delTTTTTTTTTA	PIK3IP1	ENSG00000100100.13	transcript	ENST00000215912.10	protein_coding		927		chr22	TogoVar
PIK3R1_chr5_68210756_68306821	68262594	TGCATGTA others(3): Show TGCATGTATAC	T T	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02615.hp1 HG02976.hp1 others(1): Show HG01891.hp2 HG02615.hp1 HG02976.hp1 HG03516.hp2	a0001 a0001	a0001c0008 a0001c0009 a0001c0008 a0001c0009	a0001c0008t0045 a0001c0008t0181 a0001c0009t0045 others(1): Show a0001c0008t0045 a0001c0008t0181 a0001c0009t0045 a0001c0009t0098	a0001c0008t0045g0123 a0001c0008t0181g0226 a0001c0009t0045g0285 others(1): Show a0001c0008t0045g0123 a0001c0008t0181g0226 a0001c0009t0045g0285 a0001c0009t0098g0277	4	308	0.0130	-10	c.335 others(29): Show c.335-10795_335-10786delGCATGTATAC	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	2/15			chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68262595	GCATGTAT others(3): Show GCATGTATACA	G G	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02258.hp2 HG02486.hp2 others(6): Show HG02257.hp1 HG02258.hp2 HG02486.hp2 HG02559.hp2 HG02922.hp2 HG03486.hp1 NA18522.hp2 NA18906.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0002c0004 a0001c0001 a0002c0003 a0002c0004	a0001c0001t0097 a0002c0003t0030 a0002c0003t0033 others(6): Show a0001c0001t0097 a0002c0003t0030 a0002c0003t0033 a0002c0003t0063 a0002c0003t0064 a0002c0003t0092 a0002c0004t0030 a0002c0004t0031 a0002c0004t0178	a0001c0001t0097g0019 a0002c0003t0030g0280 a0002c0003t0033g0302 others(6): Show a0001c0001t0097g0019 a0002c0003t0030g0280 a0002c0003t0033g0302 a0002c0003t0063g0276 a0002c0003t0064g0281 a0002c0003t0092g0301 a0002c0004t0030g0239 a0002c0004t0031g0237 a0002c0004t0178g0224	9	308	0.0292	-10	c.335 others(29): Show c.335-10778_335-10769delTACACATGTA	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68262625	GCATGTAT others(3): Show GCATGTATACA	G G	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0050 a0001c0001t0050	a0001c0001t0050g0279 a0001c0001t0050g0279	1	308	0.0033	-10	c.335 others(29): Show c.335-10747_335-10738delACACATGTAT	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68262695	ACATGTAG others(3): Show ACATGTAGATG	A A	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02615.hp1 HG02976.hp1 others(1): Show HG01891.hp2 HG02615.hp1 HG02976.hp1 HG03516.hp2	a0001 a0001	a0001c0008 a0001c0009 a0001c0008 a0001c0009	a0001c0008t0045 a0001c0008t0181 a0001c0009t0045 others(1): Show a0001c0008t0045 a0001c0008t0181 a0001c0009t0045 a0001c0009t0098	a0001c0008t0045g0123 a0001c0008t0181g0226 a0001c0009t0045g0285 others(1): Show a0001c0008t0045g0123 a0001c0008t0181g0226 a0001c0009t0045g0285 a0001c0009t0098g0277	4	308	0.0130	-10	c.335 others(29): Show c.335-10678_335-10669delGATGCATGTA	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68262731	ACATGTAG others(3): Show ACATGTAGATG	A A	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0181 a0001c0008t0181	a0001c0008t0181g0226 a0001c0008t0181g0226	1	308	0.0033	-10	c.335 others(29): Show c.335-10649_335-10640delGCATGTAGAT	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68262864	TATACATG others(3): Show TATACATGTAG	T T	intron_variant intron_variant	MODIFIER	HG03942.hp2 HG03942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0106 a0001c0001t0106	a0001c0001t0106g0022 a0001c0001t0106g0022	1	308	0.0033	-10	c.335 others(29): Show c.335-10506_335-10497delGATACATGTA	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68262936	TATACATG others(3): Show TATACATGTAG	T T	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0012 a0002c0003t0012	a0002c0003t0012g0067 a0002c0003t0012g0067	1	308	0.0033	-10	c.335 others(29): Show c.335-10434_335-10425delGATACATGTA	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68263008	TATACATG others(3): Show TATACATGTAG	T T	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG00621.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0049 a0001c0001t0049	a0001c0001t0049g0023 a0001c0001t0049g0023	1	308	0.0033	-10	c.335 others(29): Show c.335-10362_335-10353delGATACATGTA	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68294969	AAAAATAA others(3): Show AAAAATAAAAT	A A	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0091 a0002c0003t0091	a0002c0003t0091g0236 a0002c0003t0091g0236	1	308	0.0033	-10	c.156 others(27): Show c.1569-167_1569-158delAAATAAAATA	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	12/15		INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68301362	ATATATGT others(3): Show ATATATGTGTG	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00733.hp1 HG01934.hp1 HG02258.hp1 others(3): Show HG00733.hp1 HG01934.hp1 HG02258.hp1 HG02615.hp1 HG03098.hp1 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0009 a0001c0010 others(1): Show a0001c0001 a0001c0009 a0001c0010 a0001c0012	a0001c0001t0055 a0001c0009t0098 a0001c0010t0051 others(2): Show a0001c0001t0055 a0001c0009t0098 a0001c0010t0051 a0001c0010t0165 a0001c0012t0164	a0001c0001t0055g0259 a0001c0009t0098g0277 a0001c0010t0051g0215 others(3): Show a0001c0001t0055g0259 a0001c0009t0098g0277 a0001c0010t0051g0215 a0001c0010t0051g0230 a0001c0010t0165g0214 a0001c0012t0164g0235	6	308	0.0195	-10	c.37 others(21): Show c.3763_*3772delATATGTGTGT	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	16/16	3763	INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68301364	ATATGTGT others(3): Show ATATGTGTGTG	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00738.hp2 HG00741.hp1 NA18971.hp1 HG00738.hp2 HG00741.hp1 NA18971.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0022 a0001c0002t0022 a0001c0001t0022 a0001c0002t0022	a0001c0001t0022g0291 a0001c0001t0022g0292 a0001c0002t0022g0180 a0001c0001t0022g0291 a0001c0001t0022g0292 a0001c0002t0022g0180	3	308	0.0097	-10	c.37 others(21): Show c.3765_*3774delATGTGTGTGT	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	16/16	3765	INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68301366	ATGTGTGT others(3): Show ATGTGTGTGTG	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03834.hp1 HG03834.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0171 a0002c0003t0171	a0002c0003t0171g0054 a0002c0003t0171g0054	1	308	0.0033	-10	c.37 others(21): Show c.3783_*3792delGTGTGTGTGT	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	16/16	3783	INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68301384	GTGTGTGT others(3): Show GTGTGTGTGTA	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01081.hp2 HG01993.hp1 HG02451.hp2 others(3): Show HG01081.hp2 HG01993.hp1 HG02451.hp2 NA18747.hp1 NA18952.hp2 NA18959.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0009 a0001c0001t0115 a0001c0002t0009 a0001c0001t0009 a0001c0001t0115 a0001c0002t0009	a0001c0001t0009g0045 a0001c0001t0009g0097 a0001c0001t0115g0029 others(3): Show a0001c0001t0009g0045 a0001c0001t0009g0097 a0001c0001t0115g0029 a0001c0002t0009g0127 a0001c0002t0009g0185 a0001c0002t0009g0187	6	308	0.0195	-10	c.37 others(21): Show c.3785_*3794delGTGTGTGTAT	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	16/16	3785	INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68301386	GTGTGTGT others(3): Show GTGTGTGTATA	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00323.hp2 HG01884.hp1 HG02602.hp2 others(2): Show HG00323.hp2 HG01884.hp1 HG02602.hp2 HG04184.hp2 NA18980.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0041 a0001c0001t0042 a0001c0002t0041 others(2): Show a0001c0001t0041 a0001c0001t0042 a0001c0002t0041 a0001c0002t0042 a0001c0002t0110	a0001c0001t0041g0105 a0001c0001t0042g0073 a0001c0002t0041g0173 others(2): Show a0001c0001t0041g0105 a0001c0001t0042g0073 a0001c0002t0041g0173 a0001c0002t0042g0124 a0001c0002t0110g0247	5	308	0.0162	-10	c.37 others(21): Show c.3787_*3796delGTGTGTATAT	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	16/16	3787	INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68301388	GTGTGTAT others(3): Show GTGTGTATATA	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0091 a0002c0003t0091	a0002c0003t0091g0236 a0002c0003t0091g0236	1	308	0.0033	-10	c.37 others(21): Show c.3789_*3798delGTGTATATAT	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	16/16	3789	INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68301390	GTGTATAT others(3): Show GTGTATATATA	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02630.hp1 HG02809.hp1 HG02630.hp1 HG02809.hp1	a0002 a0002	a0002c0003 a0002c0004 a0002c0003 a0002c0004	a0002c0003t0028 a0002c0004t0028 a0002c0003t0028 a0002c0004t0028	a0002c0003t0028g0284 a0002c0004t0028g0212 a0002c0003t0028g0284 a0002c0004t0028g0212	2	308	0.0065	-10	c.37 others(21): Show c.3791_*3800delGTATATATAT	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	16/16	3791	INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68301392	GTATATAT others(3): Show GTATATATATA	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01192.hp2 HG01346.hp2 HG01358.hp1 others(7): Show HG01192.hp2 HG01346.hp2 HG01358.hp1 HG03942.hp1 HG04204.hp1 NA18968.hp2 NA19007.hp1 NA19064.hp2 NA19068.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0007 a0001c0001 a0001c0002 a0001c0007	a0001c0001t0005 a0001c0001t0047 a0001c0002t0005 others(1): Show a0001c0001t0005 a0001c0001t0047 a0001c0002t0005 a0001c0007t0047	a0001c0001t0005g0034 a0001c0001t0005g0035 a0001c0001t0005g0036 others(7): Show a0001c0001t0005g0034 a0001c0001t0005g0035 a0001c0001t0005g0036 a0001c0001t0047g0254 a0001c0002t0005g0115 a0001c0002t0005g0116 a0001c0002t0005g0139 a0001c0002t0005g0161 a0001c0002t0005g0198 a0001c0007t0047g0016	10	308	0.0325	-10	c.38 others(21): Show c.3823_*3832delATATATATAT	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	16/16	3823	INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R1_chr5_68210756_68306821	68301424	ATATATAT others(3): Show ATATATATATG	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0097 a0001c0001t0097	a0001c0001t0097g0019 a0001c0001t0097g0019	1	308	0.0033	-10	c.38 others(21): Show c.3825_*3834delATATATATGT	PIK3R1	ENSG00000145675.16	transcript	ENST00000521381.6	protein_coding	16/16	3825	INFO_REALIGN_3_PRIME	chr5	TogoVar
PIK3R4_chr3_130673934_130751829	130723062	CAAAAAAA others(3): Show CAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03486.hp2 NA19058.hp1 HG03486.hp2 NA19058.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0056 a0001c0001t0001g0073 a0001c0001t0001g0056 a0001c0001t0001g0073	2	304	0.0066	-10	c.198 others(27): Show c.1981+342_1981+351delTTTTTTTTTT	PIK3R4	ENSG00000196455.8	transcript	ENST00000356763.8	protein_coding	7/19			chr3	TogoVar
PIK3R4_chr3_130673934_130751829	130747251	ATTTTTTT others(3): Show ATTTTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp2 HG02698.hp1 HG03486.hp2 HG00280.hp2 HG02698.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0056 a0001c0001t0002g0028 a0001c0001t0002g0193 a0001c0001t0001g0056 a0001c0001t0002g0028 a0001c0001t0002g0193	3	304	0.0099	-10	c.-99 others(19): Show c.-990_-981delAAAAAAAAAA	PIK3R4	ENSG00000196455.8	transcript	ENST00000356763.8	protein_coding		423		chr3	TogoVar
PIK3R5_chr17_8873916_8970707	8893076	GTGTGTGT others(3): Show GTGTGTGTGTT	G G	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00544.hp1 HG02080.hp2 others(30): Show HG00408.hp2 HG00544.hp1 HG02080.hp2 HG02523.hp2 HG02572.hp1 HG02630.hp2 HG02717.hp1 HG03098.hp2 HG03225.hp2 HG03453.hp1 HG03492.hp1 HG03540.hp2 HG03669.hp2 HG03688.hp1 HG03831.hp1 HG04199.hp2 NA18944.hp1 NA18945.hp1 NA18951.hp2 NA18965.hp1 NA18967.hp1 NA18979.hp2 NA18982.hp2 NA18988.hp1 NA18990.hp1 NA19060.hp1 NA19063.hp2 NA19065.hp1 NA19065.hp2 NA19074.hp1 NA19082.hp2 NA19088.hp2 NA19091.hp1	a0001 a0004 a0001 a0004	a0001c0002 a0001c0003 a0001c0004 others(3): Show a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0014 a0004c0022	a0001c0002t0001 a0001c0002t0009 a0001c0003t0004 others(4): Show a0001c0002t0001 a0001c0002t0009 a0001c0003t0004 a0001c0004t0001 a0001c0005t0001 a0001c0014t0001 a0004c0022t0004	a0001c0002t0001g0012 a0001c0002t0001g0040 a0001c0002t0001g0045 others(30): Show a0001c0002t0001g0012 a0001c0002t0001g0040 a0001c0002t0001g0045 a0001c0002t0001g0050 a0001c0002t0001g0054 a0001c0002t0001g0055 a0001c0002t0001g0063 a0001c0002t0001g0065 a0001c0002t0001g0069 a0001c0002t0001g0074 a0001c0002t0001g0090 a0001c0002t0001g0128 a0001c0002t0001g0159 a0001c0002t0001g0164 a0001c0002t0001g0175 a0001c0002t0001g0182 a0001c0002t0001g0187 a0001c0002t0001g0190 a0001c0002t0001g0192 a0001c0002t0001g0205 a0001c0002t0001g0206 a0001c0002t0001g0209 a0001c0002t0001g0224 a0001c0002t0001g0244 a0001c0002t0001g0266 a0001c0002t0009g0004 a0001c0003t0004g0024 a0001c0003t0004g0028 a0001c0003t0004g0135 a0001c0004t0001g0079 a0001c0005t0001g0113 a0001c0014t0001g0258 a0004c0022t0004g0152	33	298	0.1107	-10	c.482 others(25): Show c.482+500_482+509delAACACACACA	PIK3R5	ENSG00000141506.15	transcript	ENST00000447110.6	protein_coding	6/18			chr17	TogoVar
PIK3R5_chr17_8873916_8970707	8923877	TTCCCCTC others(3): Show TTCCCCTCCCC	T T	intron_variant intron_variant	MODIFIER	HG04204.hp2 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0132 a0001c0001t0001g0132	1	298	0.0034	-10	c.-13 others(29): Show c.-13-12380_-13-12371delGGGGAGGGGA	PIK3R5	ENSG00000141506.15	transcript	ENST00000447110.6	protein_coding	1/18			chr17	TogoVar
PIK3R6_chr17_8797722_8872674	8799561	CTTCAGGC others(3): Show CTTCAGGCAAG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03688.hp2 HG04204.hp1 HG04204.hp2 HG03688.hp2 HG04204.hp1 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0167 a0001c0001t0002g0238 a0001c0001t0002g0239 a0001c0001t0002g0167 a0001c0001t0002g0238 a0001c0001t0002g0239	3	354	0.0085	-10	c.37 others(21): Show c.3702_*3711delCTTGCCTGAA	PIK3R6	ENSG00000276231.5	transcript	ENST00000619866.5	protein_coding		3160		chr17	TogoVar
PIK3R6_chr17_8797722_8872674	8827763	GGAGAGAG others(3): Show GGAGAGAGAGA	G G	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG02135.hp2 HG02735.hp2 others(16): Show HG01175.hp2 HG02135.hp2 HG02735.hp2 HG03017.hp1 HG03492.hp1 HG03492.hp2 HG04115.hp2 HG04199.hp1 NA18941.hp2 NA18945.hp2 NA18956.hp2 NA18969.hp2 NA18971.hp2 NA18977.hp2 NA18994.hp1 NA19009.hp2 NA19058.hp2 NA19070.hp1 NA19082.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0034 a0001c0001t0001g0061 a0001c0001t0001g0087 others(15): Show a0001c0001t0001g0034 a0001c0001t0001g0061 a0001c0001t0001g0087 a0001c0001t0001g0095 a0001c0001t0001g0099 a0001c0001t0001g0103 a0001c0001t0001g0110 a0001c0001t0001g0123 a0001c0001t0001g0189 a0001c0001t0001g0193 a0001c0001t0001g0229 a0001c0001t0001g0243 a0001c0001t0001g0250 a0001c0001t0001g0261 a0001c0001t0001g0314 a0001c0001t0001g0338 a0001c0001t0002g0001 a0001c0001t0002g0150	19	354	0.0537	-10	c.139 others(27): Show c.1392+339_1392+348delTCTCTCTCTC	PIK3R6	ENSG00000276231.5	transcript	ENST00000619866.5	protein_coding	12/19			chr17	TogoVar
PIK3R6_chr17_8797722_8872674	8829239	ACACATGC others(3): Show ACACATGCATG	A A	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0076 a0001c0001t0001g0076	1	354	0.0028	-10	c.890 others(25): Show c.890-259_890-250delCATGCATGTG	PIK3R6	ENSG00000276231.5	transcript	ENST00000619866.5	protein_coding	10/19			chr17	TogoVar
PIK3R6_chr17_8797722_8872674	8829491	CACACACA others(3): Show CACACACACTG	C C	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0302 a0001c0001t0001g0302	1	354	0.0028	-10	c.889 others(25): Show c.889+205_889+214delCAGTGTGTGT	PIK3R6	ENSG00000276231.5	transcript	ENST00000619866.5	protein_coding	10/19			chr17	TogoVar
PIK3R6_chr17_8797722_8872674	8829574	ACAGACAC others(3): Show ACAGACACACT	A A	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0302 a0001c0001t0001g0302	1	354	0.0028	-10	c.889 others(25): Show c.889+122_889+131delAGTGTGTCTG	PIK3R6	ENSG00000276231.5	transcript	ENST00000619866.5	protein_coding	10/19			chr17	TogoVar
PIKFYVE_chr2_208261255_208363746	208362837	AGTGTGTG others(3): Show AGTGTGTGTGT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02572.hp2 HG02647.hp1 HG02976.hp1 others(2): Show HG02572.hp2 HG02647.hp1 HG02976.hp1 HG03209.hp2 HG06807.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0013 a0001c0003t0001 a0001c0003t0013	a0001c0003t0001g0269 a0001c0003t0001g0270 a0001c0003t0001g0272 others(2): Show a0001c0003t0001g0269 a0001c0003t0001g0270 a0001c0003t0001g0272 a0001c0003t0013g0271 a0001c0003t0013g0273	5	288	0.0174	-10	c.75 others(21): Show c.7533_*7542delGTGTGTGTGT	PIKFYVE	ENSG00000115020.17	transcript	ENST00000264380.9	protein_coding		4092		chr2	TogoVar

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