Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
SCGB1C2_chr17_132569_144067	141510	ATGGGGGG others(5): Show ATGGGGGGGACCT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01081.hp2 HG01175.hp1 HG01433.hp2 others(12): Show HG01081.hp2 HG01175.hp1 HG01433.hp2 HG01891.hp2 HG02004.hp2 HG02080.hp1 HG02129.hp2 HG02886.hp2 HG02896.hp2 HG03139.hp1 HG03453.hp1 HG03579.hp2 HG03654.hp2 NA18943.hp1 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0004 a0002c0002t0001 a0001c0001t0004 a0002c0002t0001	a0001c0001t0004g0003 a0002c0002t0001g0003 a0002c0002t0001g0023 others(2): Show a0001c0001t0004g0003 a0002c0002t0001g0003 a0002c0002t0001g0023 a0002c0002t0001g0024 a0002c0002t0001g0025	15	402	0.0373	-12	c.25 others(23): Show c.2569_*2580delTGGGGGGGACCT	SCGB1C2	ENSG00000268320.4	transcript	ENST00000595228.4	protein_coding		2444		chr17	TogoVar
SCGB2A1_chr11_62203673_62218943	62206840	AAAATAAA others(5): Show AAAATAAATAAAT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp1 HG02572.hp2 NA19009.hp2 others(1): Show HG02109.hp1 HG02572.hp2 NA19009.hp2 NA19065.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0089 a0001c0001t0001g0135 a0001c0001t0001g0153 others(1): Show a0001c0001t0001g0089 a0001c0001t0001g0135 a0001c0001t0001g0153 a0001c0001t0001g0171	4	442	0.0091	-12	c.-18 others(23): Show c.-1891_-1880delAAATAAATAAAT	SCGB2A1	ENSG00000124939.6	transcript	ENST00000244930.6	protein_coding		1832		chr11	TogoVar
SCGB2A1_chr11_62203673_62218943	62208600	ATTGCCTC others(5): Show ATTGCCTCATTCC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01070.hp2 HG01071.hp1 HG02735.hp1 HG01070.hp2 HG01071.hp1 HG02735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0013 a0001c0001t0001g0197 a0001c0001t0001g0013 a0001c0001t0001g0197	3	442	0.0068	-12	c.-13 others(21): Show c.-131_-120delTTGCCTCATTCC	SCGB2A1	ENSG00000124939.6	transcript	ENST00000244930.6	protein_coding		72		chr11	TogoVar
SCGB2A1_chr11_62203673_62218943	62209635	ATGTGTGT others(5): Show ATGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp2 HG00408.hp1 others(67): Show HG00140.hp1 HG00280.hp2 HG00408.hp1 HG00408.hp2 HG00438.hp2 HG00544.hp2 HG00597.hp1 HG00639.hp1 HG00642.hp2 HG00738.hp2 HG01069.hp1 HG01081.hp1 HG01099.hp2 HG01109.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp2 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp2 HG01361.hp1 HG01496.hp1 HG01515.hp2 HG01517.hp1 HG01884.hp2 HG01978.hp2 HG02004.hp1 HG02027.hp2 HG02080.hp2 HG02109.hp2 HG02129.hp2 HG02293.hp2 HG02486.hp2 HG02559.hp2 HG02723.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp1 HG02965.hp1 HG03130.hp2 HG03225.hp1 HG03491.hp1 HG03492.hp2 HG03516.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp2 HG03654.hp1 NA18522.hp1 NA18522.hp2 NA18940.hp1 NA18945.hp1 NA18960.hp2 NA18965.hp1 NA18971.hp2 NA18978.hp1 NA18983.hp2 NA18986.hp1 NA18988.hp2 NA19007.hp2 NA19009.hp1 NA19056.hp2 NA19058.hp2 NA19068.hp1 NA19083.hp1 NA19085.hp1 NA19089.hp2 NA20752.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0002 a0001c0001t0001g0025 a0001c0001t0001g0026 others(35): Show a0001c0001t0001g0002 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0032 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0119 a0001c0001t0001g0208 a0001c0001t0001g0209 a0001c0001t0004g0002	70	442	0.1584	-12	c.56- others(25): Show c.56-746_56-735delGTGTGTGTGTGT	SCGB2A1	ENSG00000124939.6	transcript	ENST00000244930.6	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr11	TogoVar
SCGB2A1_chr11_62203673_62218943	62212932	ATACACAC others(5): Show ATACACACATATG	A A	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0143 a0002c0002t0001g0143	1	442	0.0023	-12	c.244 others(27): Show c.244-775_244-764delCATATGTACACA	SCGB2A1	ENSG00000124939.6	transcript	ENST00000244930.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr11	TogoVar
SCGB2B2_chr19_34585644_34682159	34594652	CGTGTGTG others(5): Show CGTGTGTGTGTGT	C C	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00735.hp1 HG01106.hp1 HG01168.hp1 others(12): Show HG00735.hp1 HG01106.hp1 HG01168.hp1 HG02257.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02647.hp2 HG02886.hp2 HG02970.hp1 HG03130.hp2 HG03927.hp2 NA18959.hp2 NA18966.hp1 NA18975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0026 a0001c0001t0036 a0001c0001t0049 others(8): Show a0001c0001t0026 a0001c0001t0036 a0001c0001t0049 a0001c0001t0066 a0001c0001t0087 a0001c0001t0088 a0001c0001t0097 a0001c0001t0099 a0001c0001t0117 a0001c0001t0125 a0001c0001t0128	a0001c0001t0026g0145 a0001c0001t0026g0147 a0001c0001t0026g0197 others(12): Show a0001c0001t0026g0145 a0001c0001t0026g0147 a0001c0001t0026g0197 a0001c0001t0036g0070 a0001c0001t0036g0077 a0001c0001t0049g0331 a0001c0001t0049g0332 a0001c0001t0066g0082 a0001c0001t0087g0150 a0001c0001t0088g0187 a0001c0001t0097g0205 a0001c0001t0099g0208 a0001c0001t0117g0321 a0001c0001t0125g0336 a0001c0001t0128g0350	15	370	0.0405	-12	c.-10 others(20): Show c.-101_-90delACACACACACAC	SCGB2B2	ENSG00000205209.8	transcript	ENST00000601241.6	protein_coding	2/4	90		chr19	TogoVar
SCGB2B2_chr19_34585644_34682159	34608660	CATATATA others(5): Show CATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0102 a0001c0001t0102	a0001c0001t0102g0268 a0001c0001t0102g0268	1	370	0.0027	-12	c.-20 others(35): Show c.-2031-12078_-2031-12067delATATATATATAT	SCGB2B2	ENSG00000205209.8	transcript	ENST00000601241.6	protein_coding	1/3			chr19	TogoVar
SCGB2B2_chr19_34585644_34682159	34612022	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG02145.hp1 HG02895.hp2 others(7): Show HG00733.hp1 HG02145.hp1 HG02895.hp2 HG04199.hp1 HG04228.hp2 NA18906.hp1 NA18948.hp2 NA18989.hp1 NA19012.hp2 NA19058.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0009 a0001c0001t0012 others(3): Show a0001c0001t0006 a0001c0001t0009 a0001c0001t0012 a0001c0001t0038 a0001c0001t0079 a0001c0001t0134	a0001c0001t0006g0153 a0001c0001t0009g0121 a0001c0001t0009g0127 others(7): Show a0001c0001t0006g0153 a0001c0001t0009g0121 a0001c0001t0009g0127 a0001c0001t0009g0128 a0001c0001t0009g0129 a0001c0001t0012g0133 a0001c0001t0012g0189 a0001c0001t0038g0130 a0001c0001t0079g0093 a0001c0001t0134g0356	10	370	0.0270	-12	c.-20 others(35): Show c.-2031-15440_-2031-15429delAAAAAAAAAAAA	SCGB2B2	ENSG00000205209.8	transcript	ENST00000601241.6	protein_coding	1/3			chr19	TogoVar
SCGB2B2_chr19_34585644_34682159	34644342	GTTTTTTT others(5): Show GTTTTTTTGTTTT	G G	intron_variant intron_variant	MODIFIER	HG00621.hp1 NA18956.hp2 NA18959.hp2 HG00621.hp1 NA18956.hp2 NA18959.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0082 a0001c0001t0086 a0001c0001t0087 a0001c0001t0082 a0001c0001t0086 a0001c0001t0087	a0001c0001t0082g0179 a0001c0001t0086g0180 a0001c0001t0087g0150 a0001c0001t0082g0179 a0001c0001t0086g0180 a0001c0001t0087g0150	3	370	0.0081	-12	c.-20 others(35): Show c.-2032+31276_-2032+31287delAAAACAAAAAAA	SCGB2B2	ENSG00000205209.8	transcript	ENST00000601241.6	protein_coding	1/3			chr19	TogoVar
SCGB2B2_chr19_34585644_34682159	34645529	CACACAGA others(5): Show CACACAGACACAG	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00544.hp2 HG00558.hp1 others(35): Show HG00140.hp1 HG00544.hp2 HG00558.hp1 HG00673.hp2 HG01071.hp2 HG01081.hp1 HG01168.hp2 HG01169.hp1 HG01496.hp1 HG01975.hp1 HG02080.hp1 HG02132.hp2 HG02300.hp2 HG02965.hp2 HG03209.hp1 HG03471.hp2 NA18747.hp2 NA18941.hp1 NA18946.hp1 NA18947.hp1 NA18949.hp1 NA18953.hp1 NA18960.hp1 NA18970.hp1 NA18974.hp1 NA18977.hp2 NA18979.hp1 NA18981.hp1 NA18989.hp2 NA18993.hp1 NA18995.hp1 NA19000.hp2 NA19003.hp2 NA19009.hp2 NA19012.hp1 NA19063.hp1 NA19085.hp1 NA19090.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0014 a0001c0001t0031 others(13): Show a0001c0001t0003 a0001c0001t0014 a0001c0001t0031 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0044 a0001c0001t0051 a0001c0001t0098 a0001c0001t0103 a0001c0001t0104 a0001c0001t0105 a0001c0001t0106 a0001c0001t0108 a0001c0001t0111 a0001c0001t0113	a0001c0001t0003g0270 a0001c0001t0003g0271 a0001c0001t0003g0272 others(35): Show a0001c0001t0003g0270 a0001c0001t0003g0271 a0001c0001t0003g0272 a0001c0001t0003g0274 a0001c0001t0003g0276 a0001c0001t0003g0277 a0001c0001t0003g0280 a0001c0001t0003g0282 a0001c0001t0003g0283 a0001c0001t0003g0284 a0001c0001t0003g0285 a0001c0001t0003g0286 a0001c0001t0003g0288 a0001c0001t0003g0289 a0001c0001t0003g0294 a0001c0001t0003g0297 a0001c0001t0003g0300 a0001c0001t0014g0308 a0001c0001t0014g0309 a0001c0001t0014g0310 a0001c0001t0031g0275 a0001c0001t0031g0279 a0001c0001t0031g0287 a0001c0001t0041g0295 a0001c0001t0042g0278 a0001c0001t0043g0305 a0001c0001t0043g0306 a0001c0001t0044g0313 a0001c0001t0044g0314 a0001c0001t0051g0011 a0001c0001t0098g0264 a0001c0001t0103g0301 a0001c0001t0104g0269 a0001c0001t0105g0296 a0001c0001t0106g0281 a0001c0001t0108g0290 a0001c0001t0111g0311 a0001c0001t0113g0316	38	370	0.1027	-12	c.-20 others(35): Show c.-2032+30089_-2032+30100delCTGTGTCTGTGT	SCGB2B2	ENSG00000205209.8	transcript	ENST00000601241.6	protein_coding	1/3			chr19	TogoVar
SCGB2B2_chr19_34585644_34682159	34645535	GACACAGA others(5): Show GACACAGACACAC	G G	intron_variant intron_variant	MODIFIER	HG02056.hp2 HG02132.hp1 NA18943.hp1 others(1): Show HG02056.hp2 HG02132.hp1 NA18943.hp1 NA18953.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0034 others(1): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0034 a0001c0001t0064	a0001c0001t0001g0081 a0001c0001t0005g0020 a0001c0001t0034g0033 others(1): Show a0001c0001t0001g0081 a0001c0001t0005g0020 a0001c0001t0034g0033 a0001c0001t0064g0074	4	370	0.0108	-12	c.-20 others(35): Show c.-2032+30083_-2032+30094delGTGTGTCTGTGT	SCGB2B2	ENSG00000205209.8	transcript	ENST00000601241.6	protein_coding	1/3			chr19	TogoVar
SCGB2B2_chr19_34585644_34682159	34649993	TCCTAAGT others(5): Show TCCTAAGTCATCC	T T	intron_variant intron_variant	MODIFIER	NA18966.hp1 NA18966.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0049 a0001c0001t0049	a0001c0001t0049g0331 a0001c0001t0049g0331	1	370	0.0027	-12	c.-20 others(35): Show c.-2032+25625_-2032+25636delGGATGACTTAGG	SCGB2B2	ENSG00000205209.8	transcript	ENST00000601241.6	protein_coding	1/3			chr19	TogoVar
SCGB2B2_chr19_34585644_34682159	34650928	GGGATGCA others(5): Show GGGATGCAAGAAT	G G	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01123.hp2 HG01891.hp1 others(13): Show HG01109.hp1 HG01123.hp2 HG01891.hp1 HG02145.hp2 HG02257.hp2 HG02572.hp1 HG02615.hp1 HG02647.hp1 HG02647.hp2 HG02895.hp1 HG02897.hp1 HG03139.hp1 HG03540.hp2 NA19030.hp2 NA19043.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0023 a0001c0001t0040 a0001c0001t0046 others(7): Show a0001c0001t0023 a0001c0001t0040 a0001c0001t0046 a0001c0001t0047 a0001c0001t0115 a0001c0001t0116 a0001c0001t0117 a0001c0001t0118 a0001c0001t0119 a0001c0001t0120	a0001c0001t0023g0009 a0001c0001t0023g0320 a0001c0001t0023g0322 others(11): Show a0001c0001t0023g0009 a0001c0001t0023g0320 a0001c0001t0023g0322 a0001c0001t0040g0209 a0001c0001t0040g0210 a0001c0001t0046g0010 a0001c0001t0047g0325 a0001c0001t0047g0326 a0001c0001t0115g0324 a0001c0001t0116g0328 a0001c0001t0117g0321 a0001c0001t0118g0327 a0001c0001t0119g0329 a0001c0001t0120g0323	16	370	0.0432	-12	c.-20 others(35): Show c.-2032+24690_-2032+24701delATTCTTGCATCC	SCGB2B2	ENSG00000205209.8	transcript	ENST00000601241.6	protein_coding	1/3			chr19	TogoVar
SCGN_chr6_25647215_25706783	25651137	TCCTCACA others(5): Show TCCTCACAGCAAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03688.hp2 HG03688.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0259 a0001c0001t0002g0259	1	368	0.0027	-12	c.-12 others(23): Show c.-1266_-1255delCCTCACAGCAAC	SCGN	ENSG00000079689.15	transcript	ENST00000377961.3	protein_coding		1077		chr6	TogoVar
SCGN_chr6_25647215_25706783	25658003	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00544.hp2 HG00673.hp1 others(49): Show HG00438.hp2 HG00544.hp2 HG00673.hp1 HG01167.hp1 HG01243.hp1 HG01891.hp1 HG01934.hp2 HG01993.hp1 HG02071.hp1 HG02074.hp2 HG02129.hp1 HG02129.hp2 HG02451.hp1 HG02486.hp1 HG02572.hp2 HG02615.hp2 HG02622.hp2 HG02738.hp1 HG02896.hp2 HG02965.hp1 HG03017.hp1 HG03098.hp1 HG03486.hp1 HG03486.hp2 HG03516.hp2 HG03704.hp1 HG03710.hp2 HG03942.hp1 NA18945.hp2 NA18955.hp2 NA18970.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18977.hp1 NA18979.hp2 NA18984.hp1 NA18987.hp2 NA18990.hp1 NA18990.hp2 NA18995.hp2 NA18999.hp1 NA18999.hp2 NA19002.hp1 NA19005.hp2 NA19011.hp1 NA19054.hp2 NA19072.hp1 NA19072.hp2 NA19076.hp2 NA19080.hp1 NA19240.hp1	a0001 a0002 a0007 a0001 a0002 a0007	a0001c0001 a0001c0004 a0002c0002 others(1): Show a0001c0001 a0001c0004 a0002c0002 a0007c0009	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0013 a0001c0001t0015 a0001c0001t0017 a0001c0001t0018 a0001c0004t0001 a0002c0002t0003 a0007c0009t0001	a0001c0001t0001g0013 a0001c0001t0001g0077 a0001c0001t0001g0088 others(45): Show a0001c0001t0001g0013 a0001c0001t0001g0077 a0001c0001t0001g0088 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0134 a0001c0001t0001g0136 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0141 a0001c0001t0002g0001 a0001c0001t0002g0056 a0001c0001t0002g0069 a0001c0001t0002g0071 a0001c0001t0002g0072 a0001c0001t0002g0073 a0001c0001t0002g0075 a0001c0001t0002g0078 a0001c0001t0002g0079 a0001c0001t0002g0142 a0001c0001t0003g0003 a0001c0001t0003g0074 a0001c0001t0003g0076 a0001c0001t0003g0089 a0001c0001t0003g0119 a0001c0001t0003g0133 a0001c0001t0003g0140 a0001c0001t0003g0157 a0001c0001t0003g0235 a0001c0001t0013g0120 a0001c0001t0015g0135 a0001c0001t0017g0070 a0001c0001t0018g0126 a0001c0004t0001g0127 a0002c0002t0003g0115 a0002c0002t0003g0116 a0002c0002t0003g0117 a0007c0009t0001g0013	52	368	0.1413	-12	c.154 others(29): Show c.154-3506_154-3495delTTTTTTTTTTTT	SCGN	ENSG00000079689.15	transcript	ENST00000377961.3	protein_coding	2/10		INFO_REALIGN_3_PRIME	chr6	TogoVar
SCGN_chr6_25647215_25706783	25676768	TTTCCATC others(5): Show TTTCCATCCCCTC	T T	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp1 HG00323.hp2 others(114): Show HG00140.hp2 HG00280.hp1 HG00323.hp2 HG00408.hp1 HG00609.hp1 HG00733.hp1 HG00738.hp1 HG00741.hp2 HG01069.hp2 HG01071.hp2 HG01074.hp1 HG01109.hp1 HG01109.hp2 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01192.hp1 HG01255.hp2 HG01257.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp2 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp2 HG01516.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp1 HG01943.hp1 HG01943.hp2 HG02027.hp1 HG02027.hp2 HG02056.hp2 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp2 HG02135.hp1 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02280.hp2 HG02300.hp1 HG02300.hp2 HG02559.hp1 HG02572.hp1 HG02602.hp2 HG02622.hp1 HG02698.hp1 HG02922.hp2 HG03017.hp2 HG03130.hp1 HG03195.hp1 HG03239.hp2 HG03490.hp1 HG03540.hp1 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp2 HG03834.hp2 HG03942.hp2 HG04184.hp1 HG04199.hp2 HG04228.hp1 NA18522.hp1 NA18940.hp1 NA18940.hp2 NA18943.hp1 NA18945.hp1 NA18948.hp2 NA18956.hp2 NA18957.hp2 NA18959.hp2 NA18964.hp1 NA18965.hp2 NA18974.hp1 NA18978.hp2 NA18979.hp1 NA18980.hp1 NA18982.hp1 NA18986.hp2 NA18987.hp1 NA18998.hp1 NA19003.hp1 NA19003.hp2 NA19007.hp2 NA19054.hp1 NA19055.hp1 NA19056.hp2 NA19058.hp1 NA19064.hp1 NA19074.hp2 NA19075.hp2 NA19076.hp1 NA19079.hp1 NA19081.hp1 NA19089.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	a0001 a0003 a0004 others(2): Show a0001 a0003 a0004 a0005 a0008	a0001c0001 a0001c0004 a0001c0006 others(4): Show a0001c0001 a0001c0004 a0001c0006 a0003c0003 a0004c0005 a0005c0007 a0008c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0012 a0001c0004t0004 a0001c0006t0003 a0003c0003t0003 a0004c0005t0004 a0004c0005t0011 a0005c0007t0002 a0008c0010t0003	a0001c0001t0001g0019 a0001c0001t0001g0029 a0001c0001t0001g0030 others(105): Show a0001c0001t0001g0019 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0033 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0053 a0001c0001t0001g0194 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0217 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0244 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0002g0005 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0047 a0001c0001t0002g0048 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0052 a0001c0001t0002g0054 a0001c0001t0002g0055 a0001c0001t0002g0081 a0001c0001t0002g0208 a0001c0001t0002g0209 a0001c0001t0002g0213 a0001c0001t0002g0233 a0001c0001t0003g0028 a0001c0001t0003g0032 a0001c0001t0003g0043 a0001c0001t0003g0205 a0001c0001t0003g0229 a0001c0001t0003g0230 a0001c0001t0003g0231 a0001c0001t0003g0234 a0001c0001t0003g0243 a0001c0001t0004g0022 a0001c0001t0004g0023 a0001c0001t0004g0024 a0001c0001t0004g0265 a0001c0001t0004g0290 a0001c0001t0004g0294 a0001c0001t0004g0296 a0001c0001t0004g0297 a0001c0001t0004g0298 a0001c0001t0004g0301 a0001c0001t0004g0302 a0001c0001t0004g0304 a0001c0001t0004g0308 a0001c0001t0004g0311 a0001c0001t0004g0312 a0001c0001t0004g0313 a0001c0001t0004g0319 a0001c0001t0004g0320 a0001c0001t0004g0326 a0001c0001t0005g0021 a0001c0001t0005g0255 a0001c0001t0005g0257 a0001c0001t0005g0260 a0001c0001t0005g0286 a0001c0001t0005g0289 a0001c0001t0005g0292 a0001c0001t0005g0295 a0001c0001t0005g0303 a0001c0001t0005g0305 a0001c0001t0005g0306 a0001c0001t0005g0309 a0001c0001t0005g0310 a0001c0001t0005g0314 a0001c0001t0005g0315 a0001c0001t0005g0321 a0001c0001t0005g0322 a0001c0001t0006g0025 a0001c0001t0006g0026 a0001c0001t0006g0266 a0001c0001t0006g0267 a0001c0001t0006g0299 a0001c0001t0006g0300 a0001c0001t0006g0307 a0001c0001t0006g0317 a0001c0001t0006g0318 a0001c0001t0006g0323 a0001c0001t0012g0316 a0001c0004t0004g0291 a0001c0006t0003g0046 a0003c0003t0003g0027 a0003c0003t0003g0328 a0003c0003t0003g0329 a0003c0003t0003g0330 a0004c0005t0004g0293 a0004c0005t0011g0264 a0005c0007t0002g0207 a0008c0010t0003g0034	117	368	0.3179	-12	c.472 others(29): Show c.472-5168_472-5157delCCATCCCCTCTT	SCGN	ENSG00000079689.15	transcript	ENST00000377961.3	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr6	TogoVar
SCGN_chr6_25647215_25706783	25684922	CAATAGAC others(5): Show CAATAGACTTTAA	C C	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02922.hp1 HG02970.hp1 HG02895.hp2 HG02922.hp1 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0009 a0001c0001t0008 a0001c0001t0009	a0001c0001t0008g0057 a0001c0001t0009g0250 a0001c0001t0009g0262 a0001c0001t0008g0057 a0001c0001t0009g0250 a0001c0001t0009g0262	3	368	0.0082	-12	c.527 others(29): Show c.527+2923_527+2934delCTTTAAAATAGA	SCGN	ENSG00000079689.15	transcript	ENST00000377961.3	protein_coding	7/10		INFO_REALIGN_3_PRIME	chr6	TogoVar
SCGN_chr6_25647215_25706783	25685650	GTATAATT others(5): Show GTATAATTATAAT	G G	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0222 a0001c0001t0002g0222	1	368	0.0027	-12	c.528 others(29): Show c.528-3511_528-3500delATTATAATTATA	SCGN	ENSG00000079689.15	transcript	ENST00000377961.3	protein_coding	7/10		INFO_REALIGN_3_PRIME	chr6	TogoVar
SCHIP1_chr3_159268244_159902359	159289406	CTTATTTA others(5): Show CTTATTTATTTAT	C C	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02965.hp2 HG02055.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0072 a0001c0001t0005g0080 a0001c0001t0001g0072 a0001c0001t0005g0080	2	100	0.0200	-12	c.63+ others(29): Show c.63+15541_63+15552delTATTTATTTATT	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159432286	ATGTGTGT others(5): Show ATGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02897.hp1 HG02965.hp2 others(9): Show HG02572.hp1 HG02897.hp1 HG02965.hp2 HG03139.hp1 HG03139.hp2 HG03471.hp1 HG03579.hp2 NA18522.hp1 NA18906.hp1 NA19030.hp1 NA20129.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0005 a0001c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0005 a0001c0002t0001 a0001c0004t0001	a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0055 others(9): Show a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0055 a0001c0001t0001g0071 a0001c0001t0001g0078 a0001c0001t0005g0080 a0001c0002t0001g0022 a0001c0002t0001g0054 a0001c0002t0001g0057 a0001c0002t0001g0076 a0001c0002t0001g0079 a0001c0004t0001g0018	12	100	0.1200	-12	c.63+ others(31): Show c.63+158446_63+158457delTGTGTGTGTGTG	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159432331	TGTGTGTG others(5): Show TGTGTGTGTGAGA	T T	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01256.hp1	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0001 a0003c0005t0001	a0003c0005t0001g0053 a0003c0005t0001g0053	1	100	0.0100	-12	c.63+ others(31): Show c.63+158450_63+158461delTGTGTGTGAGAG	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159432335	TGTGTGAG others(5): Show TGTGTGAGAGAGA	T T	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG01167.hp2 HG01169.hp2 others(5): Show HG00438.hp2 HG01167.hp2 HG01169.hp2 HG01256.hp2 HG01891.hp1 HG02698.hp1 NA19058.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 a0001c0001t0001 a0001c0001t0004 a0001c0002t0001	a0001c0001t0001g0005 a0001c0001t0001g0014 a0001c0001t0001g0062 others(5): Show a0001c0001t0001g0005 a0001c0001t0001g0014 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0068 a0001c0001t0004g0059 a0001c0002t0001g0028 a0001c0002t0001g0030	8	100	0.0800	-12	c.63+ others(31): Show c.63+158454_63+158465delTGTGAGAGAGAG	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159432337	TGTGAGAG others(5): Show TGTGAGAGAGAGA	T T	intron_variant intron_variant	MODIFIER	HG03654.hp2 HG03654.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0070 a0001c0001t0001g0070	1	100	0.0100	-12	c.63+ others(31): Show c.63+158456_63+158467delTGAGAGAGAGAG	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159553967	CGTGTGTG others(5): Show CGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01243.hp1 HG01243.hp2 others(12): Show HG00438.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG02027.hp1 HG02145.hp2 HG02630.hp1 HG02717.hp2 HG02886.hp1 HG03195.hp1 HG03471.hp2 HG03486.hp1 HG03540.hp1 HG03579.hp1 NA19240.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(1): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0002c0003t0001	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0013 others(12): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0013 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0023 a0001c0001t0001g0044 a0001c0001t0001g0087 a0001c0001t0001g0095 a0001c0002t0001g0017 a0001c0002t0001g0048 a0001c0002t0001g0058 a0001c0002t0002g0047 a0002c0003t0001g0091	15	100	0.1500	-12	c.64- others(31): Show c.64-210435_64-210424delGTGTGTGTGTGT	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159554014	GTGTGTTT others(5): Show GTGTGTTTGTGTA	G G	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0076 a0001c0002t0001g0076	1	100	0.0100	-12	c.64- others(31): Show c.64-210423_64-210412delTTGTGTATGTGT	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159626085	CTTATATA others(5): Show CTTATATAGATAG	C C	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0060 a0001c0001t0001g0060	1	100	0.0100	-12	c.64- others(31): Show c.64-138357_64-138346delTTATATAGATAG	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7			chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159626129	GATAGATA others(5): Show GATAGATAGATAT	G G	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0016 a0001c0001t0001g0016	1	100	0.0100	-12	c.64- others(31): Show c.64-138311_64-138300delAGATAGATATAT	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159626247	TCTATATA others(5): Show TCTATATAGATAG	T T	intron_variant intron_variant	MODIFIER	NA20805.hp1 NA20805.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0051 a0001c0002t0001g0051	1	100	0.0100	-12	c.64- others(31): Show c.64-138195_64-138184delCTATATAGATAG	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7			chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159637371	CCACACAC others(5): Show CCACACACACACA	C C	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02145.hp1 HG02451.hp1 others(16): Show HG02055.hp1 HG02145.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02630.hp1 HG02630.hp2 HG02717.hp1 HG02717.hp2 HG02965.hp1 HG02976.hp1 HG03139.hp2 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03540.hp2 HG03579.hp1 NA20129.hp1 NA20805.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0001 a0001c0002t0001 a0002c0003t0001 a0001c0001t0001 a0001c0002t0001 a0002c0003t0001	a0001c0001t0001g0003 a0001c0001t0001g0023 a0001c0001t0001g0026 others(16): Show a0001c0001t0001g0003 a0001c0001t0001g0023 a0001c0001t0001g0026 a0001c0001t0001g0035 a0001c0001t0001g0045 a0001c0001t0001g0050 a0001c0001t0001g0055 a0001c0001t0001g0073 a0001c0001t0001g0075 a0001c0001t0001g0078 a0001c0001t0001g0090 a0001c0001t0001g0096 a0001c0002t0001g0039 a0001c0002t0001g0051 a0001c0002t0001g0058 a0001c0002t0001g0074 a0001c0002t0001g0082 a0001c0002t0001g0084 a0002c0003t0001g0091	19	100	0.1900	-12	c.64- others(31): Show c.64-127032_64-127021delACACACACACAC	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159694537	CAAGAAAG others(5): Show CAAGAAAGAAAGA	C C	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp2 HG01106.hp1 others(19): Show HG00438.hp1 HG00438.hp2 HG01106.hp1 HG01106.hp2 HG01256.hp1 HG01256.hp2 HG01891.hp1 HG01978.hp2 HG02027.hp2 HG02572.hp2 HG02735.hp2 HG03098.hp1 HG03139.hp1 HG03654.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp1 NA18906.hp2 NA19007.hp1 NA19007.hp2 NA19058.hp2 NA20300.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0005 a0001c0001 a0001c0002 a0003c0005	a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 a0003c0005t0001	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 others(19): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0016 a0001c0001t0001g0025 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0040 a0001c0001t0001g0049 a0001c0001t0001g0062 a0001c0001t0001g0065 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0070 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0004g0059 a0001c0002t0001g0054 a0001c0002t0001g0079 a0001c0002t0001g0092 a0003c0005t0001g0053	22	100	0.2200	-12	c.64- others(29): Show c.64-69846_64-69835delAAAGAAAGAAAG	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159694597	AAAGAAAG others(5): Show AAAGAAAGAAAGG	A A	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp2 HG03579.hp2 HG01243.hp1 HG01243.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0002t0001 a0001c0004t0001 a0001c0001t0001 a0001c0002t0001 a0001c0004t0001	a0001c0001t0001g0087 a0001c0002t0001g0017 a0001c0004t0001g0018 a0001c0001t0001g0087 a0001c0002t0001g0017 a0001c0004t0001g0018	3	100	0.0300	-12	c.64- others(29): Show c.64-69843_64-69832delGAAAGAAAGGAA	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159704864	TTTTCTTT others(5): Show TTTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02886.hp2 HG02055.hp1 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0088 a0001c0002t0001g0082 a0001c0001t0001g0088 a0001c0002t0001g0082	2	100	0.0200	-12	c.64- others(29): Show c.64-59547_64-59536delCTTTCTTTCTTT	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159704896	CTTTCTTT others(5): Show CTTTCTTTCTTTA	C C	intron_variant intron_variant	MODIFIER	HG02572.hp2 NA18906.hp1 NA18906.hp2 others(1): Show HG02572.hp2 NA18906.hp1 NA18906.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0025 a0001c0001t0001g0036 a0001c0001t0001g0040 others(1): Show a0001c0001t0001g0025 a0001c0001t0001g0036 a0001c0001t0001g0040 a0001c0001t0001g0094	4	100	0.0400	-12	c.64- others(29): Show c.64-59535_64-59524delATTTCTTTCTTT	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159713221	AGAGAAAG others(5): Show AGAGAAAGAAAGG	A A	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02886.hp1 HG02622.hp1 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0031 a0001c0002t0002g0047 a0001c0001t0001g0031 a0001c0002t0002g0047	2	100	0.0200	-12	c.64- others(29): Show c.64-51221_64-51210delGAGAAAGAAAGG	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7			chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159713222	GAGAAAGA others(5): Show GAGAAAGAAAGGA	G G	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0019 a0001c0001t0001g0019	1	100	0.0100	-12	c.64- others(29): Show c.64-51210_64-51199delGAAGAAAGAAAG	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159713233	GAAGAAAG others(5): Show GAAGAAAGAAAGA	G G	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02976.hp2 NA18522.hp2 HG02630.hp2 HG02976.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0045 a0001c0001t0001g0049 a0001c0002t0001g0086 a0001c0001t0001g0045 a0001c0001t0001g0049 a0001c0002t0001g0086	3	100	0.0300	-12	c.64- others(29): Show c.64-51167_64-51156delGAAAGAAAGAAA	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159750257	GTGTGTGT others(5): Show GTGTGTGTATATA	G G	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02717.hp1 HG02886.hp1 HG02622.hp1 HG02717.hp1 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0031 a0001c0001t0001g0035 a0001c0002t0002g0047 a0001c0001t0001g0031 a0001c0001t0001g0035 a0001c0002t0002g0047	3	100	0.0300	-12	c.64- others(29): Show c.64-14184_64-14173delGTGTGTATATAT	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159750261	GTGTATAT others(5): Show GTGTATATATATA	G G	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02572.hp1 HG03130.hp2 HG02145.hp1 HG02572.hp1 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0026 a0001c0001t0001g0081 a0001c0002t0001g0057 a0001c0001t0001g0026 a0001c0001t0001g0081 a0001c0002t0001g0057	3	100	0.0300	-12	c.64- others(29): Show c.64-14180_64-14169delGTATATATATAT	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159786666	CGTGTGTG others(5): Show CGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02922.hp2 HG03579.hp1 others(1): Show HG02886.hp1 HG02922.hp2 HG03579.hp1 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0002c0003 a0001c0002 a0002c0003	a0001c0002t0001 a0001c0002t0002 a0002c0003t0001 a0001c0002t0001 a0001c0002t0002 a0002c0003t0001	a0001c0002t0001g0076 a0001c0002t0002g0047 a0002c0003t0001g0034 others(1): Show a0001c0002t0001g0076 a0001c0002t0002g0047 a0002c0003t0001g0034 a0002c0003t0001g0091	4	100	0.0400	-12	c.759 others(31): Show c.759+21547_759+21558delGTGTGTGTGTGT	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCHIP1_chr3_159268244_159902359	159843001	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp2 HG01243.hp2 others(18): Show HG01167.hp2 HG01169.hp2 HG01243.hp2 HG01433.hp1 HG01891.hp2 HG02055.hp1 HG02145.hp2 HG02486.hp1 HG02572.hp1 HG02717.hp2 HG02897.hp1 HG02965.hp1 HG03130.hp1 HG03139.hp1 HG03225.hp2 NA19030.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0021 a0001c0002t0001g0017 a0001c0002t0001g0022 others(18): Show a0001c0001t0001g0021 a0001c0002t0001g0017 a0001c0002t0001g0022 a0001c0002t0001g0024 a0001c0002t0001g0028 a0001c0002t0001g0029 a0001c0002t0001g0030 a0001c0002t0001g0032 a0001c0002t0001g0033 a0001c0002t0001g0039 a0001c0002t0001g0048 a0001c0002t0001g0051 a0001c0002t0001g0054 a0001c0002t0001g0057 a0001c0002t0001g0058 a0001c0002t0001g0061 a0001c0002t0001g0074 a0001c0002t0001g0079 a0001c0002t0001g0082 a0001c0002t0001g0084 a0001c0002t0001g0085	21	100	0.2100	-12	c.760 others(31): Show c.760-23145_760-23134delTTTTTTTTTTTT	SCHIP1	ENSG00000283154.3	transcript	ENST00000638749.2	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
SCIMP_chr17_5203920_5239860	5216200	AAAATAAA others(5): Show AAAATAAATAAAT	A A	intron_variant intron_variant	MODIFIER	HG03669.hp1 HG03669.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0326 a0001c0001t0004g0326	1	386	0.0026	-12	c.210 others(29): Show c.210-1214_210-1203delATTTATTTATTT	SCIMP	ENSG00000161929.15	transcript	ENST00000574081.6	protein_coding	3/4			chr17	TogoVar
SCIMP_chr17_5203920_5239860	5224442	TTTTGTTT others(5): Show TTTTGTTTGTTTG	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01891.hp1 HG02055.hp1 others(12): Show HG01884.hp1 HG01891.hp1 HG02055.hp1 HG02145.hp2 HG02258.hp2 HG02723.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03225.hp1 HG03486.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0001t0008	a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0081 others(12): Show a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0150 a0001c0001t0001g0271 a0001c0001t0001g0345 a0001c0001t0003g0212 a0001c0001t0003g0213 a0001c0001t0003g0214 a0001c0001t0006g0032 a0001c0001t0006g0033 a0001c0001t0008g0080	15	386	0.0389	-12	c.22- others(25): Show c.22-998_22-987delCAAACAAACAAA	SCIMP	ENSG00000161929.15	transcript	ENST00000574081.6	protein_coding	1/4			chr17	TogoVar
SCIN_chr7_12565720_12665182	12628030	CGCGTGTG others(5): Show CGCGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG03195.hp1 HG03471.hp1 others(2): Show HG02109.hp1 HG03195.hp1 HG03471.hp1 HG03579.hp2 NA19043.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0003 a0002c0003t0007 a0002c0003t0121 others(1): Show a0002c0003t0003 a0002c0003t0007 a0002c0003t0121 a0002c0003t0190	a0002c0003t0003g0338 a0002c0003t0007g0341 a0002c0003t0007g0343 others(2): Show a0002c0003t0003g0338 a0002c0003t0007g0341 a0002c0003t0007g0343 a0002c0003t0121g0340 a0002c0003t0190g0342	5	372	0.0134	-12	c.119 others(31): Show c.1198-1069_1198-1058delCGTGTGTGTGTG	SCIN	ENSG00000006747.15	transcript	ENST00000297029.10	protein_coding	8/15		INFO_REALIGN_3_PRIME	chr7	TogoVar
SCLT1_chr4_128878993_129098539	128894363	AACACACA others(5): Show AACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp1 HG00642.hp1 others(33): Show HG00140.hp2 HG00280.hp1 HG00642.hp1 HG01074.hp2 HG01258.hp1 HG01358.hp1 HG01516.hp1 HG01943.hp1 HG01981.hp2 HG02080.hp1 HG02155.hp2 HG02165.hp2 HG02602.hp1 HG02698.hp2 HG02818.hp1 HG02896.hp2 HG02897.hp1 HG03486.hp1 HG03491.hp1 HG03669.hp1 HG03704.hp1 HG03704.hp2 HG03942.hp1 HG04199.hp1 NA18941.hp1 NA18951.hp2 NA18974.hp1 NA19000.hp1 NA19011.hp2 NA19030.hp1 NA19062.hp2 NA19063.hp1 NA19078.hp1 NA19240.hp1 NA20300.hp1 NA20805.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0004 others(1): Show a0001c0001 a0001c0002 a0001c0004 a0002c0003	a0001c0001t0001 a0001c0001t0003 a0001c0002t0001 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0002t0001 a0001c0004t0001 a0002c0003t0001	a0001c0001t0001g0148 a0001c0001t0001g0265 a0001c0001t0001g0266 others(32): Show a0001c0001t0001g0148 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0003g0001 a0001c0001t0003g0005 a0001c0001t0003g0006 a0001c0002t0001g0036 a0001c0002t0001g0040 a0001c0002t0001g0043 a0001c0002t0001g0063 a0001c0002t0001g0078 a0001c0002t0001g0088 a0001c0002t0001g0093 a0001c0004t0001g0017 a0001c0004t0001g0020 a0001c0004t0001g0021 a0001c0004t0001g0022 a0001c0004t0001g0023 a0001c0004t0001g0024 a0001c0004t0001g0025 a0001c0004t0001g0026 a0001c0004t0001g0027 a0001c0004t0001g0031 a0001c0004t0001g0032 a0001c0004t0001g0109 a0001c0004t0001g0110 a0001c0004t0001g0112 a0001c0004t0001g0114 a0001c0004t0001g0116 a0001c0004t0001g0117 a0001c0004t0001g0118 a0001c0004t0001g0119 a0002c0003t0001g0156 a0002c0003t0001g0169	36	288	0.1250	-12	c.183 others(31): Show c.1830-3238_1830-3227delGTGTGTGTGTGT	SCLT1	ENSG00000151466.12	transcript	ENST00000281142.10	protein_coding	18/20			chr4	TogoVar
SCLT1_chr4_128878993_129098539	129039898	GCGCACAC others(5): Show GCGCACACACACA	G G	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0189 a0001c0001t0001g0189	1	288	0.0035	-12	c.235 others(27): Show c.235-814_235-803delTGTGTGTGTGCG	SCLT1	ENSG00000151466.12	transcript	ENST00000281142.10	protein_coding	4/20			chr4	TogoVar
SCLT1_chr4_128878993_129098539	129053557	ATTTTTTT others(5): Show ATTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00408.hp1 HG00423.hp1 others(70): Show HG00280.hp2 HG00408.hp1 HG00423.hp1 HG00544.hp1 HG00639.hp1 HG00642.hp2 HG01070.hp2 HG01074.hp1 HG01099.hp2 HG01106.hp2 HG01192.hp1 HG01243.hp2 HG01255.hp1 HG01258.hp2 HG01261.hp1 HG01346.hp2 HG01361.hp2 HG01934.hp2 HG01943.hp2 HG01975.hp2 HG01981.hp1 HG01993.hp1 HG02015.hp2 HG02080.hp2 HG02083.hp2 HG02273.hp2 HG02523.hp2 HG02630.hp1 HG03017.hp1 HG03139.hp1 HG03471.hp1 HG03490.hp1 HG03540.hp2 HG03688.hp2 HG03831.hp1 HG03834.hp1 HG03942.hp2 HG04115.hp2 HG04199.hp2 NA18747.hp1 NA18941.hp2 NA18945.hp2 NA18948.hp1 NA18949.hp1 NA18954.hp2 NA18963.hp2 NA18965.hp1 NA18970.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp1 NA18983.hp1 NA18985.hp2 NA18990.hp2 NA18995.hp2 NA18997.hp1 NA18997.hp2 NA19003.hp1 NA19005.hp2 NA19010.hp1 NA19012.hp1 NA19062.hp1 NA19063.hp2 NA19064.hp2 NA19065.hp1 NA19079.hp1 NA19081.hp2 NA19084.hp1 NA19086.hp2 NA19087.hp1 NA19088.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0008 a0002c0003 others(1): Show a0001c0001 a0001c0008 a0002c0003 a0005c0013	a0001c0001t0001 a0001c0008t0001 a0002c0003t0001 others(1): Show a0001c0001t0001 a0001c0008t0001 a0002c0003t0001 a0005c0013t0001	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 others(67): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0123 a0001c0001t0001g0140 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0191 a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0210 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0215 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0222 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0226 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0244 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0255 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0259 a0001c0001t0001g0269 a0001c0008t0001g0198 a0001c0008t0001g0214 a0002c0003t0001g0208 a0005c0013t0001g0211	73	288	0.2535	-12	c.103 others(29): Show c.103-9518_103-9507delAAAAAAAAAAAA	SCLT1	ENSG00000151466.12	transcript	ENST00000281142.10	protein_coding	2/20			chr4	TogoVar
SCMH1_chr1_41022202_41247306	41047392	CTTTTTTT others(5): Show CTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0132 a0001c0001t0003g0132	1	304	0.0033	-12	c.130 others(29): Show c.1307-806_1307-795delAAAAAAAAAAAA	SCMH1	ENSG00000010803.17	transcript	ENST00000695335.1	protein_coding	11/15			chr1	TogoVar
SCMH1_chr1_41022202_41247306	41073618	TCATCCAT others(5): Show TCATCCATCCATC	T T	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00609.hp1 HG01358.hp1 others(22): Show HG00280.hp1 HG00609.hp1 HG01358.hp1 HG01952.hp2 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG03239.hp1 HG03669.hp2 HG03927.hp2 HG04184.hp1 HG04228.hp2 NA18953.hp1 NA18960.hp2 NA18968.hp1 NA18992.hp1 NA18993.hp1 NA18998.hp2 NA19005.hp2 NA19060.hp1 NA19062.hp2 NA19074.hp2 NA19077.hp1 NA19080.hp2 NA19083.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0001 a0001c0001t0008	a0001c0001t0001g0142 a0001c0001t0001g0198 a0001c0001t0001g0199 others(22): Show a0001c0001t0001g0142 a0001c0001t0001g0198 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0208 a0001c0001t0001g0209 a0001c0001t0001g0210 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0008g0003 a0001c0001t0008g0004	25	304	0.0822	-12	c.978 others(29): Show c.978+1589_978+1600delGATGGATGGATG	SCMH1	ENSG00000010803.17	transcript	ENST00000695335.1	protein_coding	9/15			chr1	TogoVar
SCMH1_chr1_41022202_41247306	41096713	TCCTGTTC others(5): Show TCCTGTTCTATGG	T T	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02976.hp2 HG02257.hp2 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0175 a0001c0001t0001g0176 a0001c0001t0001g0175 a0001c0001t0001g0176	2	304	0.0066	-12	c.745 others(31): Show c.745+16558_745+16569delCCATAGAACAGG	SCMH1	ENSG00000010803.17	transcript	ENST00000695335.1	protein_coding	8/15			chr1	TogoVar
SCMH1_chr1_41022202_41247306	41155459	AAAACAAA others(5): Show AAAACAAACAAAC	A A	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00323.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0268 a0001c0001t0005g0268	1	304	0.0033	-12	c.107 others(29): Show c.107-3787_107-3776delGTTTGTTTGTTT	SCMH1	ENSG00000010803.17	transcript	ENST00000695335.1	protein_coding	4/15			chr1	TogoVar

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