Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
NTAN1_chr16_15032857_15061074	15042718	C C	CTATTTAT others(13): Show CTATTTATTTATTTATTTATT	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG02647.hp1 HG02896.hp1 others(3): Show HG01081.hp1 HG02647.hp1 HG02896.hp1 NA18962.hp1 NA18978.hp2 NA18983.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0015 a0002c0002t0001g0027 a0002c0002t0001g0015 a0002c0002t0001g0027	6	453	0.0133	20	c.434 others(37): Show c.434-1062_434-1043dupAATAAATAAATAAATAAATA	NTAN1	ENSG00000157045.9	transcript	ENST00000287706.8	protein_coding	5/9			chr16	TogoVar
NTAQ1_chr8_123411774_123447240	123419733	G G	GCCCGCCC others(13): Show GCCCGCCCTCCCTCCCTCCCT	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG03139.hp2 HG02451.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0007 a0001c0001t0006 a0001c0001t0007	a0001c0001t0006g0070 a0001c0001t0007g0069 a0001c0001t0006g0070 a0001c0001t0007g0069	2	366	0.0055	20	c.83+ others(35): Show c.83+2804_83+2805insGCCCTCCCTCCCTCCCTCCC	NTAQ1	ENSG00000156795.8	transcript	ENST00000287387.7	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
NTAQ1_chr8_123411774_123447240	123419733	G G	GCCCTCCC others(13): Show GCCCTCCCTCCCTCCCTCCCT	intron_variant intron_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0210 a0001c0001t0001g0210	1	366	0.0027	20	c.83+ others(35): Show c.83+2806_83+2825dupCCCTCCCTCCCTCCCTCCCT	NTAQ1	ENSG00000156795.8	transcript	ENST00000287387.7	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
NTMT2_chr1_170140959_170173866	170167779	C C	CTGGACTG others(13): Show CTGGACTGGGCAGTGGTGCTT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18972.hp2 NA18972.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0020 a0002c0002t0020	a0002c0002t0020g0079 a0002c0002t0020g0079	1	356	0.0028	20	c.26 others(27): Show c.26_*45dupACTGGGCAGTGGTGCTTTGG	NTMT2	ENSG00000203740.4	transcript	ENST00000439373.3	protein_coding	4/4	46	INFO_REALIGN_3_PRIME	chr1	TogoVar
NTM_chr11_131365615_132341822	131401814	A A	ATATATAT others(13): Show ATATATATATATATATATGTG	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG01496.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0017	1	86	0.0116	20	c.82+ others(37): Show c.82+30943_82+30944insGTGTATATATATATATATAT	NTM	ENSG00000182667.15	transcript	ENST00000683400.1	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr11	TogoVar
NTM_chr11_131365615_132341822	131424600	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG01978.hp2 HG02258.hp1 others(2): Show HG01978.hp1 HG01978.hp2 HG02258.hp1 HG02602.hp2 HG02735.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0012 a0001c0001t0001 a0001c0001t0002 a0001c0002t0012	a0001c0001t0001g0037 a0001c0001t0001g0057 a0001c0001t0001g0062 others(2): Show a0001c0001t0001g0037 a0001c0001t0001g0057 a0001c0001t0001g0062 a0001c0001t0002g0079 a0001c0002t0012g0068	5	86	0.0581	20	c.82+ others(37): Show c.82+53730_82+53731insTTTTTTTTTTTTTTTTTTTT	NTM	ENSG00000182667.15	transcript	ENST00000683400.1	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr11	TogoVar
NTM_chr11_131365615_132341822	131616776	G G	GGTGTGTG others(13): Show GGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0019 a0001c0001t0010g0019	1	86	0.0116	20	c.82+ others(39): Show c.82+245889_82+245890insTGTGTGTGTGTGTGTGTGTG	NTM	ENSG00000182667.15	transcript	ENST00000683400.1	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr11	TogoVar
NTM_chr11_131365615_132341822	131812183	C C	CCTCTCTC others(13): Show CCTCTCTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03516.hp1 NA19240.hp1 HG03098.hp1 HG03516.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0001 a0001c0001t0003 a0001c0001t0004	a0001c0001t0001g0083 a0001c0001t0003g0051 a0001c0001t0004g0043 a0001c0001t0001g0083 a0001c0001t0003g0051 a0001c0001t0004g0043	3	86	0.0349	20	c.83- others(37): Show c.83-99362_83-99343dupCTCTCTCTCTCTCTCTCTCT	NTM	ENSG00000182667.15	transcript	ENST00000683400.1	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr11	TogoVar
NTM_chr11_131365615_132341822	131874029	T T	TTATATAT others(13): Show TTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01515.hp2 HG01515.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0039 a0001c0002t0005g0039	1	86	0.0116	20	c.83- others(37): Show c.83-37535_83-37534insTATATATATATATATATATA	NTM	ENSG00000182667.15	transcript	ENST00000683400.1	protein_coding	1/8			chr11	TogoVar
NTM_chr11_131365615_132341822	131976116	A A	ATTCCTTC others(13): Show ATTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0057 a0001c0001t0001g0057	1	86	0.0116	20	c.167 others(39): Show c.167+64491_167+64510dupCCTTCCTTCCTTCCTTCCTT	NTM	ENSG00000182667.15	transcript	ENST00000683400.1	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr11	TogoVar
NTM_chr11_131365615_132341822	131987378	C C	CCTATTCT others(13): Show CCTATTCTATTCTATTCTATT	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0008 a0001c0001t0003g0008	1	86	0.0116	20	c.167 others(39): Show c.167+75766_167+75785dupCTATTCTATTCTATTCTATT	NTM	ENSG00000182667.15	transcript	ENST00000683400.1	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr11	TogoVar
NTM_chr11_131365615_132341822	132015633	A A	ATATTTTA others(13): Show ATATTTTATTTTATTTTATTT	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG04184.hp2 HG02451.hp1 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0013 a0001c0001t0002 a0001c0001t0013	a0001c0001t0002g0035 a0001c0001t0013g0048 a0001c0001t0002g0035 a0001c0001t0013g0048	2	86	0.0233	20	c.167 others(41): Show c.167+104004_167+104023dupTTTATTTTATTTTATTTTAT	NTM	ENSG00000182667.15	transcript	ENST00000683400.1	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr11	TogoVar
NTN1_chr17_9016510_9249000	9114160	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19054.hp2 NA19054.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0037 a0001c0001t0001g0037	1	258	0.0039	20	c.101 others(41): Show c.1019-48652_1019-48651insTATATATATATATATATATA	NTN1	ENSG00000065320.9	transcript	ENST00000173229.7	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr17	TogoVar
NTN1_chr17_9016510_9249000	9114162	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00733.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0007 a0001c0003t0007	a0001c0003t0007g0087 a0001c0003t0007g0087	1	258	0.0039	20	c.101 others(41): Show c.1019-48650_1019-48649insTATATATATATATATATATA	NTN1	ENSG00000065320.9	transcript	ENST00000173229.7	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr17	TogoVar
NTN1_chr17_9016510_9249000	9114164	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03688.hp1 HG03688.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0086 a0001c0003t0001g0086	1	258	0.0039	20	c.101 others(41): Show c.1019-48648_1019-48647insTATATATATATATATATATA	NTN1	ENSG00000065320.9	transcript	ENST00000173229.7	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr17	TogoVar
NTN1_chr17_9016510_9249000	9193920	T T	TAAAAAAA others(13): Show TAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0251 a0001c0001t0012g0251	1	258	0.0039	20	c.141 others(41): Show c.1411+10956_1411+10975dupAAAAAAAAAAAAAAAAAAAA	NTN1	ENSG00000065320.9	transcript	ENST00000173229.7	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr17	TogoVar
NTN1_chr17_9016510_9249000	9204176	G G	GTTCCTTC others(13): Show GTTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00609.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0160 a0001c0001t0002g0160	1	258	0.0039	20	c.141 others(41): Show c.1412-16976_1412-16975insTTCCTTCCTTCCTTCCTTCC	NTN1	ENSG00000065320.9	transcript	ENST00000173229.7	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr17	TogoVar
NTN1_chr17_9016510_9249000	9204193	C C	CTCCTTCC others(13): Show CTCCTTCCTTCCTTCCTTCCT	intron_variant intron_variant	MODIFIER	HG01952.hp2 HG02109.hp2 HG02145.hp1 others(2): Show HG01952.hp2 HG02109.hp2 HG02145.hp1 HG03130.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0013 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0013 a0001c0001t0018 a0001c0002t0001	a0001c0001t0001g0122 a0001c0001t0003g0046 a0001c0001t0013g0252 others(2): Show a0001c0001t0001g0122 a0001c0001t0003g0046 a0001c0001t0013g0252 a0001c0001t0018g0201 a0001c0002t0001g0171	5	258	0.0194	20	c.141 others(41): Show c.1412-16965_1412-16946dupCCTTCCTTCCTTCCTTCCTT	NTN1	ENSG00000065320.9	transcript	ENST00000173229.7	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr17	TogoVar
NTN1_chr17_9016510_9249000	9225713	C C	CGGGCGGG others(13): Show CGGGCGGGCCAGGGCGGGCCA	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02717.hp2 HG02818.hp1 others(5): Show HG02055.hp2 HG02717.hp2 HG02818.hp1 HG02886.hp2 HG02970.hp1 HG03130.hp2 NA19240.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0004t0002 a0001c0001t0001 a0001c0001t0002 a0001c0004t0002	a0001c0001t0001g0076 a0001c0001t0002g0008 a0001c0001t0002g0088 others(5): Show a0001c0001t0001g0076 a0001c0001t0002g0008 a0001c0001t0002g0088 a0001c0001t0002g0102 a0001c0001t0002g0159 a0001c0001t0002g0255 a0001c0004t0002g0032 a0001c0004t0002g0066	8	258	0.0310	20	c.148 others(39): Show c.1486+4490_1486+4491insAGGGCGGGCCAGGGCGGGCC	NTN1	ENSG00000065320.9	transcript	ENST00000173229.7	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr17	TogoVar
NTN4_chr12_95652807_95795764	95667863	A A	AAAATAAA others(13): Show AAAATAAATAAATAAATAAAT	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02896.hp1 HG02897.hp1 others(5): Show HG02818.hp1 HG02896.hp1 HG02897.hp1 HG03098.hp2 HG03139.hp2 HG03195.hp1 HG06807.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0012 a0001c0001t0015 others(1): Show a0001c0001t0006 a0001c0001t0012 a0001c0001t0015 a0001c0001t0026	a0001c0001t0006g0147 a0001c0001t0012g0068 a0001c0001t0012g0069 others(5): Show a0001c0001t0006g0147 a0001c0001t0012g0068 a0001c0001t0012g0069 a0001c0001t0012g0070 a0001c0001t0012g0072 a0001c0001t0012g0212 a0001c0001t0015g0029 a0001c0001t0026g0309	8	324	0.0247	20	c.158 others(39): Show c.1580-1903_1580-1884dupATTTATTTATTTATTTATTT	NTN4	ENSG00000074527.13	transcript	ENST00000343702.9	protein_coding	8/9			chr12	TogoVar
NTN4_chr12_95652807_95795764	95700080	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18961.hp2 NA18968.hp2 NA18961.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0237 a0001c0001t0001g0240 a0001c0001t0001g0237 a0001c0001t0001g0240	2	324	0.0062	20	c.118 others(41): Show c.1180+10341_1180+10360dupAAAAAAAAAAAAAAAAAAAA	NTN4	ENSG00000074527.13	transcript	ENST00000343702.9	protein_coding	5/9			chr12	TogoVar
NTN4_chr12_95652807_95795764	95770988	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02647.hp1 HG02895.hp1 others(2): Show HG00639.hp2 HG02647.hp1 HG02895.hp1 HG03041.hp2 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 others(1): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0014	a0001c0001t0004g0047 a0001c0001t0005g0048 a0001c0001t0006g0221 others(2): Show a0001c0001t0004g0047 a0001c0001t0005g0048 a0001c0001t0006g0221 a0001c0001t0014g0050 a0001c0001t0014g0051	5	324	0.0154	20	c.585 others(39): Show c.585+15950_585+15951insAAAAAAAAAAAAAAAAAAAA	NTN4	ENSG00000074527.13	transcript	ENST00000343702.9	protein_coding	2/9			chr12	TogoVar
NTNG1_chr1_107136039_107489923	107280853	C C	CTTATTTT others(13): Show CTTATTTTATTTTATTTTATT	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0016 a0001c0002t0016	a0001c0002t0016g0005 a0001c0002t0016g0005	1	150	0.0067	20	c.247 others(39): Show c.247-43397_247-43378dupTATTTTATTTTATTTTATTT	NTNG1	ENSG00000162631.20	transcript	ENST00000370068.6	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr1	TogoVar
NTNG2_chr9_132157058_132249526	132189068	C C	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0046 a0001c0001t0046	a0001c0001t0046g0077 a0001c0001t0046g0077	1	358	0.0028	20	c.214 others(37): Show c.214-8890_214-8871dupTTTTTTTTTTTTTTTTTTTT	NTNG2	ENSG00000196358.12	transcript	ENST00000393229.4	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTNG2_chr9_132157058_132249526	132216414	C C	CTCTCTCT others(13): Show CTCTCTCTCTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01943.hp2 HG01943.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0289 a0001c0002t0001g0289	1	358	0.0028	20	c.858 others(39): Show c.858-10434_858-10433insCTCTCTCTGTGTGTGTGTGT	NTNG2	ENSG00000196358.12	transcript	ENST00000393229.4	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK1_chr1_156855865_156886850	156869018	C C	CCCTTCCT others(13): Show CCCTTCCTTCCTTCCTTCCTT	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01361.hp1 HG02132.hp2 others(4): Show HG01175.hp2 HG01361.hp1 HG02132.hp2 HG02165.hp2 NA18970.hp2 NA18986.hp1 NA18998.hp1	a0001 a0012 a0001 a0012	a0001c0003 a0001c0006 a0001c0013 others(1): Show a0001c0003 a0001c0006 a0001c0013 a0012c0021	a0001c0003t0001 a0001c0006t0001 a0001c0013t0001 others(1): Show a0001c0003t0001 a0001c0006t0001 a0001c0013t0001 a0012c0021t0001	a0001c0003t0001g0145 a0001c0003t0001g0146 a0001c0003t0001g0147 others(4): Show a0001c0003t0001g0145 a0001c0003t0001g0146 a0001c0003t0001g0147 a0001c0006t0001g0232 a0001c0013t0001g0109 a0001c0013t0001g0110 a0012c0021t0001g0119	7	392	0.0179	20	c.717 others(35): Show c.717+424_717+443dupCCTTCCTTCCTTCCTTCCTT	NTRK1	ENSG00000198400.14	transcript	ENST00000524377.7	protein_coding	6/16		INFO_REALIGN_3_PRIME	chr1	TogoVar
NTRK2_chr9_84664729_85032054	84770153	A A	AACACACA others(13): Show AACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA19077.hp2 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0049 a0001c0001t0004g0049	1	170	0.0059	20	c.139 others(41): Show c.1396+18090_1396+18109dupCACACACACACACACACACA	NTRK2	ENSG00000148053.18	transcript	ENST00000277120.8	protein_coding	12/18		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK2_chr9_84664729_85032054	84798912	C C	CTATATAT others(13): Show CTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01928.hp1 HG03098.hp2 others(1): Show HG01168.hp1 HG01928.hp1 HG03098.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0028 a0001c0001t0057 a0001c0001t0002 a0001c0001t0028 a0001c0001t0057	a0001c0001t0002g0019 a0001c0001t0002g0042 a0001c0001t0028g0152 others(1): Show a0001c0001t0002g0019 a0001c0001t0002g0042 a0001c0001t0028g0152 a0001c0001t0057g0075	4	170	0.0235	20	c.139 others(41): Show c.1396+46837_1396+46856dupATATATATATATATATATAT	NTRK2	ENSG00000148053.18	transcript	ENST00000277120.8	protein_coding	12/18		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK2_chr9_84664729_85032054	84836934	G G	GTATAATA others(13): Show GTATAATATAATATAATATAA	intron_variant intron_variant	MODIFIER	HG03669.hp1 HG03669.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0120 a0001c0001t0003g0120	1	170	0.0059	20	c.139 others(41): Show c.1397-24073_1397-24054dupTAATATAATATAATATAATA	NTRK2	ENSG00000148053.18	transcript	ENST00000277120.8	protein_coding	12/18		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK2_chr9_84664729_85032054	84870331	G G	GTGTGTGT others(13): Show GTGTGTGTATATATATATATA	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01928.hp2 HG02602.hp1 others(5): Show HG01175.hp2 HG01928.hp2 HG02602.hp1 HG02683.hp2 HG02723.hp1 HG03492.hp2 NA18977.hp2 NA18999.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0023 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0023 a0001c0001t0029 a0001c0002t0002	a0001c0001t0001g0139 a0001c0001t0001g0163 a0001c0001t0001g0164 others(5): Show a0001c0001t0001g0139 a0001c0001t0001g0163 a0001c0001t0001g0164 a0001c0001t0003g0068 a0001c0001t0003g0088 a0001c0001t0023g0095 a0001c0001t0029g0051 a0001c0002t0002g0057	8	170	0.0471	20	c.163 others(39): Show c.1633+2901_1633+2902insGTGTGTATATATATATATAT	NTRK2	ENSG00000148053.18	transcript	ENST00000277120.8	protein_coding	14/18		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK2_chr9_84664729_85032054	84870331	G G	GTGTGTGT others(13): Show GTGTGTGTGTATATATATATA	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0042 a0001c0001t0002g0042	1	170	0.0059	20	c.163 others(39): Show c.1633+2901_1633+2902insGTGTGTGTATATATATATAT	NTRK2	ENSG00000148053.18	transcript	ENST00000277120.8	protein_coding	14/18		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK2_chr9_84664729_85032054	84870331	G G	GTGTGTGT others(13): Show GTGTGTGTGTGTATATATATA	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0026 a0001c0001t0026	a0001c0001t0026g0153 a0001c0001t0026g0153	1	170	0.0059	20	c.163 others(39): Show c.1633+2901_1633+2902insGTGTGTGTGTATATATATAT	NTRK2	ENSG00000148053.18	transcript	ENST00000277120.8	protein_coding	14/18		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK2_chr9_84664729_85032054	84870331	G G	GTGTGTGT others(13): Show GTGTGTGTGTGTGTATATATA	intron_variant intron_variant	MODIFIER	HG01928.hp1 HG03130.hp2 HG03669.hp1 others(3): Show HG01928.hp1 HG03130.hp2 HG03669.hp1 NA18971.hp2 NA18988.hp2 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0001t0004 a0001c0001t0008 others(2): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0008 a0001c0001t0057 a0001c0002t0007	a0001c0001t0003g0120 a0001c0001t0004g0049 a0001c0001t0004g0168 others(3): Show a0001c0001t0003g0120 a0001c0001t0004g0049 a0001c0001t0004g0168 a0001c0001t0008g0028 a0001c0001t0057g0075 a0001c0002t0007g0093	6	170	0.0353	20	c.163 others(39): Show c.1633+2901_1633+2902insGTGTGTGTGTGTATATATAT	NTRK2	ENSG00000148053.18	transcript	ENST00000277120.8	protein_coding	14/18		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK2_chr9_84664729_85032054	84882719	T T	TGTGTGCG others(13): Show TGTGTGCGCGCGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG02683.hp2 HG02683.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0023 a0001c0001t0023	a0001c0001t0023g0095 a0001c0001t0023g0095	1	170	0.0059	20	c.163 others(41): Show c.1633+15289_1633+15290insTGTGCGCGCGCGCGCGCGCG	NTRK2	ENSG00000148053.18	transcript	ENST00000277120.8	protein_coding	14/18		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK2_chr9_84664729_85032054	84882719	T T	TGTGTGTG others(13): Show TGTGTGTGTGTGCGCGCGCGC	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0021 a0001c0001t0002g0021	1	170	0.0059	20	c.163 others(41): Show c.1633+15289_1633+15290insTGTGTGTGTGCGCGCGCGCG	NTRK2	ENSG00000148053.18	transcript	ENST00000277120.8	protein_coding	14/18		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK2_chr9_84664729_85032054	84888982	A A	ATTTTTTT others(13): Show ATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03098.hp1 NA18999.hp1 NA19005.hp1 others(3): Show HG03098.hp1 NA18999.hp1 NA19005.hp1 NA19060.hp2 NA19074.hp2 NA19077.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 others(3): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 a0001c0001t0010 a0001c0001t0017 a0001c0001t0043	a0001c0001t0002g0034 a0001c0001t0004g0143 a0001c0001t0007g0072 others(3): Show a0001c0001t0002g0034 a0001c0001t0004g0143 a0001c0001t0007g0072 a0001c0001t0010g0065 a0001c0001t0017g0052 a0001c0001t0043g0061	6	170	0.0353	20	c.163 others(41): Show c.1633+21558_1633+21577dupTTTTTTTTTTTTTTTTTTTT	NTRK2	ENSG00000148053.18	transcript	ENST00000277120.8	protein_coding	14/18		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK2_chr9_84664729_85032054	84901194	G G	GTTTTATT others(13): Show GTTTTATTTTATTTTATTTTA	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02486.hp2 HG02717.hp1 others(6): Show HG02451.hp2 HG02486.hp2 HG02717.hp1 HG02896.hp1 HG02922.hp1 HG03453.hp2 NA18522.hp1 NA18522.hp2 NA19240.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0001c0003 a0001c0005 others(1): Show a0001c0001 a0001c0003 a0001c0005 a0004c0009	a0001c0001t0001 a0001c0001t0006 a0001c0001t0009 others(6): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0009 a0001c0001t0013 a0001c0001t0053 a0001c0001t0058 a0001c0003t0046 a0001c0005t0018 a0004c0009t0009	a0001c0001t0001g0009 a0001c0001t0006g0008 a0001c0001t0009g0130 others(6): Show a0001c0001t0001g0009 a0001c0001t0006g0008 a0001c0001t0009g0130 a0001c0001t0013g0108 a0001c0001t0053g0109 a0001c0001t0058g0002 a0001c0003t0046g0114 a0001c0005t0018g0012 a0004c0009t0009g0133	9	170	0.0529	20	c.163 others(41): Show c.1634-32964_1634-32963insATTTTATTTTATTTTATTTT	NTRK2	ENSG00000148053.18	transcript	ENST00000277120.8	protein_coding	14/18		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK2_chr9_84664729_85032054	84901199	G G	GTTTTATT others(13): Show GTTTTATTTTATTTTATTTTA	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG01256.hp1 HG01928.hp1 others(9): Show HG00621.hp2 HG01256.hp1 HG01928.hp1 HG02015.hp1 HG02015.hp2 HG02965.hp2 HG03834.hp1 NA18906.hp2 NA18955.hp1 NA19006.hp2 NA19010.hp1 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 a0001c0001t0010 a0001c0001t0014 a0001c0001t0022 a0001c0001t0057 a0001c0003t0013	a0001c0001t0001g0169 a0001c0001t0002g0144 a0001c0001t0002g0147 others(9): Show a0001c0001t0001g0169 a0001c0001t0002g0144 a0001c0001t0002g0147 a0001c0001t0004g0046 a0001c0001t0004g0048 a0001c0001t0004g0122 a0001c0001t0007g0106 a0001c0001t0010g0116 a0001c0001t0014g0079 a0001c0001t0022g0084 a0001c0001t0057g0075 a0001c0003t0013g0117	12	170	0.0706	20	c.163 others(41): Show c.1634-32959_1634-32958insATTTTATTTTATTTTATTTT	NTRK2	ENSG00000148053.18	transcript	ENST00000277120.8	protein_coding	14/18		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK2_chr9_84664729_85032054	84926169	C C	CCTTCCTT others(13): Show CCTTCCTTCCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01928.hp1 HG01928.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0057 a0001c0001t0057	a0001c0001t0057g0075 a0001c0001t0057g0075	1	170	0.0059	20	c.163 others(39): Show c.1634-7990_1634-7989insCCTTCCTTTCTTTCTTTCTT	NTRK2	ENSG00000148053.18	transcript	ENST00000277120.8	protein_coding	14/18		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK2_chr9_84664729_85032054	84926169	C C	CCTTTCTT others(13): Show CCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01978.hp1 NA19066.hp1 HG01978.hp1 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0010 a0001c0002t0007 a0001c0001t0010 a0001c0002t0007	a0001c0001t0010g0116 a0001c0002t0007g0090 a0001c0001t0010g0116 a0001c0002t0007g0090	2	170	0.0118	20	c.163 others(39): Show c.1634-7948_1634-7929dupCTTTCTTTCTTTCTTTCTTT	NTRK2	ENSG00000148053.18	transcript	ENST00000277120.8	protein_coding	14/18		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK2_chr9_84664729_85032054	85011958	A A	ATTATTTT others(13): Show ATTATTTTATTTTATTTTATT	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG02015.hp2 HG02109.hp2 others(11): Show HG00597.hp1 HG02015.hp2 HG02109.hp2 HG02965.hp1 HG03471.hp2 HG03831.hp2 HG04228.hp1 NA18906.hp1 NA18939.hp2 NA18971.hp2 NA18988.hp1 NA18999.hp1 NA19005.hp2 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(6): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0016 a0001c0001t0039 a0001c0001t0040 a0001c0001t0055 a0001c0002t0036	a0001c0001t0002g0034 a0001c0001t0002g0144 a0001c0001t0003g0092 others(11): Show a0001c0001t0002g0034 a0001c0001t0002g0144 a0001c0001t0003g0092 a0001c0001t0004g0031 a0001c0001t0004g0038 a0001c0001t0004g0125 a0001c0001t0004g0143 a0001c0001t0004g0168 a0001c0001t0006g0018 a0001c0001t0016g0159 a0001c0001t0039g0011 a0001c0001t0040g0160 a0001c0001t0055g0064 a0001c0002t0036g0033	14	170	0.0824	20	c.217 others(39): Show c.2173-8224_2173-8205dupTTTTATTTTATTTTATTTTA	NTRK2	ENSG00000148053.18	transcript	ENST00000277120.8	protein_coding	17/18		INFO_REALIGN_3_PRIME	chr9	TogoVar
NTRK3_chr15_87854751_88261739	87886676	C C	CTACATAT others(13): Show CTACATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00735.hp1 NA18962.hp1 others(1): Show HG00099.hp2 HG00735.hp1 NA18962.hp1 NA18998.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0026 a0001c0002t0012 a0001c0002t0025 others(1): Show a0001c0001t0026 a0001c0002t0012 a0001c0002t0025 a0001c0002t0028	a0001c0001t0026g0061 a0001c0002t0012g0123 a0001c0002t0025g0063 others(1): Show a0001c0001t0026g0061 a0001c0002t0012g0123 a0001c0002t0025g0063 a0001c0002t0028g0053	4	134	0.0299	20	c.213 others(37): Show c.2134-942_2134-941insTATATATATATATATATGTA	NTRK3	ENSG00000140538.17	transcript	ENST00000629765.3	protein_coding	17/19			chr15	TogoVar
NTRK3_chr15_87854751_88261739	87886676	C C	CTATATAT others(13): Show CTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG02976.hp1 HG03209.hp2 others(1): Show HG01346.hp2 HG02976.hp1 HG03209.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004	a0001c0001t0011 a0001c0002t0064 a0001c0003t0075 others(1): Show a0001c0001t0011 a0001c0002t0064 a0001c0003t0075 a0001c0004t0009	a0001c0001t0011g0091 a0001c0002t0064g0124 a0001c0003t0075g0016 others(1): Show a0001c0001t0011g0091 a0001c0002t0064g0124 a0001c0003t0075g0016 a0001c0004t0009g0032	4	134	0.0299	20	c.213 others(37): Show c.2134-961_2134-942dupTATATATATATATATATATA	NTRK3	ENSG00000140538.17	transcript	ENST00000629765.3	protein_coding	17/19			chr15	TogoVar
NTRK3_chr15_87854751_88261739	87886699	T T	TATATATA others(13): Show TATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0070 a0001c0004t0070	a0001c0004t0070g0070 a0001c0004t0070g0070	1	134	0.0075	20	c.213 others(37): Show c.2134-965_2134-964insGTATATATATATATATATAT	NTRK3	ENSG00000140538.17	transcript	ENST00000629765.3	protein_coding	17/19			chr15	TogoVar
NTRK3_chr15_87854751_88261739	87912929	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01070.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0058 a0001c0004t0058	a0001c0004t0058g0115 a0001c0004t0058g0115	1	134	0.0075	20	c.213 others(41): Show c.2133+16261_2133+16262insATATATATATATATATATAT	NTRK3	ENSG00000140538.17	transcript	ENST00000629765.3	protein_coding	17/19			chr15	TogoVar
NTRK3_chr15_87854751_88261739	87912931	A A	AATATATA others(13): Show AATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01952.hp2 NA18906.hp1 HG01952.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0063 a0001c0003t0060 a0001c0001t0063 a0001c0003t0060	a0001c0001t0063g0049 a0001c0003t0060g0048 a0001c0001t0063g0049 a0001c0003t0060g0048	2	134	0.0149	20	c.213 others(41): Show c.2133+16240_2133+16259dupATATATATATATATATATAT	NTRK3	ENSG00000140538.17	transcript	ENST00000629765.3	protein_coding	17/19			chr15	TogoVar
NTRK3_chr15_87854751_88261739	88033176	T T	TTATATAT others(13): Show TTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01258.hp1 HG02258.hp1 HG01258.hp1 HG02258.hp1	a0001 a0001	a0001c0002 a0001c0005 a0001c0002 a0001c0005	a0001c0002t0039 a0001c0005t0007 a0001c0002t0039 a0001c0005t0007	a0001c0002t0039g0081 a0001c0005t0007g0109 a0001c0002t0039g0081 a0001c0005t0007g0109	2	134	0.0149	20	c.139 others(37): Show c.1397-151_1397-132dupTATATATATATATATATATA	NTRK3	ENSG00000140538.17	transcript	ENST00000629765.3	protein_coding	13/19			chr15	TogoVar
NTRK3_chr15_87854751_88261739	88159943	T T	TACACACA others(13): Show TACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG03516.hp1 HG02922.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0021 a0001c0001t0020 a0001c0001t0021	a0001c0001t0020g0002 a0001c0001t0021g0001 a0001c0001t0020g0002 a0001c0001t0021g0001	2	134	0.0149	20	c.396 others(39): Show c.396-12560_396-12541dupGTGTGTGTGTGTGTGTGTGT	NTRK3	ENSG00000140538.17	transcript	ENST00000629765.3	protein_coding	5/19			chr15	TogoVar
NTRK3_chr15_87854751_88261739	88191163	C C	CGTGTGTG others(13): Show CGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG03516.hp1 HG01109.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0021 a0001c0002t0072 a0001c0001t0021 a0001c0002t0072	a0001c0001t0021g0001 a0001c0002t0072g0045 a0001c0001t0021g0001 a0001c0002t0072g0045	2	134	0.0149	20	c.249 others(37): Show c.249-6884_249-6865dupACACACACACACACACACAC	NTRK3	ENSG00000140538.17	transcript	ENST00000629765.3	protein_coding	3/19			chr15	TogoVar
NTSR1_chr20_62703836_62767771	62755813	T T	TCCTCCCT others(13): Show TCCTCCCTCCCTCCATCCATC	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG02735.hp2 HG03492.hp1 others(4): Show HG00621.hp2 HG02735.hp2 HG03492.hp1 HG03927.hp1 NA18612.hp1 NA18954.hp1 NA18980.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0012 a0001c0003t0031 a0001c0001t0001 a0001c0003t0012 a0001c0003t0031	a0001c0001t0001g0007 a0001c0001t0001g0054 a0001c0003t0012g0122 others(3): Show a0001c0001t0001g0007 a0001c0001t0001g0054 a0001c0003t0012g0122 a0001c0003t0012g0126 a0001c0003t0012g0238 a0001c0003t0031g0060	7	316	0.0222	20	c.916 others(35): Show c.916+949_916+968dupCTCCCTCCCTCCATCCATCC	NTSR1	ENSG00000101188.5	transcript	ENST00000370501.4	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr20	TogoVar

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