JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
H4C7_chr6_26241611_26251996	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	CHS	EAS	H4C7	chr6	26241611	26251996
H4C7_chr6_26241611_26251996	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	CHS	EAS	H4C7	chr6	26241611	26251996
H4C9_chr6_27134282_27144678	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	CHS	EAS	H4C9	chr6	27134282	27144678
H4C9_chr6_27134282_27144678	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	CHS	EAS	H4C9	chr6	27134282	27144678
HAAO_chr2_42762089_42797583	HG00609	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0258	CHS	EAS	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	HG00609	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0010	CHS	EAS	HAAO	chr2	42762089	42797583
HABP2_chr10_113548053_113594602	HG00609	hp1	a0001	a0001c0004	a0001c0004t0003	a0001c0004t0003g0166	CHS	EAS	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	HG00609	hp2	a0001	a0001c0004	a0001c0004t0002	a0001c0004t0002g0159	CHS	EAS	HABP2	chr10	113548053	113594602
HABP4_chr9_96445169_96496336	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0270	CHS	EAS	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0136	CHS	EAS	HABP4	chr9	96445169	96496336
HACD1_chr10_17584032_17622374	HG00609	hp1	a0004	a0004c0004	a0004c0004t0004	a0004c0004t0004g0049	CHS	EAS	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	HG00609	hp2	a0004	a0004c0004	a0004c0004t0004	a0004c0004t0004g0045	CHS	EAS	HACD1	chr10	17584032	17622374
HACD3_chr15_65525463_65583349	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0188	CHS	EAS	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0166	CHS	EAS	HACD3	chr15	65525463	65583349
HACE1_chr6_104723094_104864919	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0244	CHS	EAS	HACE1	chr6	104723094	104864919
HACE1_chr6_104723094_104864919	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0165	CHS	EAS	HACE1	chr6	104723094	104864919
HADH_chr4_107984889_108040171	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	HG00609	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0068	CHS	EAS	HADH	chr4	107984889	108040171
HAGHL_chr16_722106_734715	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HAGHL	chr16	722106	734715
HAGH_chr16_1802629_1831825	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	CHS	EAS	HAGH	chr16	1802629	1831825
HAND1_chr5_154469972_154483227	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	HG00609	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0003	CHS	EAS	HAND1	chr5	154469972	154483227
HAND2_chr4_173521091_173535229	HG00609	hp1	a0001	a0001c0002	a0001c0002t0030	a0001c0002t0030g0053	CHS	EAS	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	HG00609	hp2	a0001	a0001c0002	a0001c0002t0004	a0001c0002t0004g0005	CHS	EAS	HAND2	chr4	173521091	173535229
HAO2_chr1_119363785_119399130	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0090	CHS	EAS	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0140	CHS	EAS	HAO2	chr1	119363785	119399130
HAPLN2_chr1_156614415_156630725	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0141	CHS	EAS	HAPLN2	chr1	156614415	156630725
HAPLN2_chr1_156614415_156630725	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0112	CHS	EAS	HAPLN2	chr1	156614415	156630725
HAPLN3_chr15_88872294_88900544	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0064	CHS	EAS	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0198	CHS	EAS	HAPLN3	chr15	88872294	88900544
HAPLN4_chr19_19249756_19267804	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	HG00609	hp2	a0002	a0002c0008	a0002c0008t0001	a0002c0008t0001g0059	CHS	EAS	HAPLN4	chr19	19249756	19267804
HAPSTR1_chr16_9086644_9126635	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0088	CHS	EAS	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	HG00609	hp2	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0001	CHS	EAS	HAPSTR1	chr16	9086644	9126635
HAPSTR2_chrX_140086678_140097911	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	CHS	EAS	HAPSTR2	chrX	140086678	140097911
HARBI1_chr11_46597861_46622227	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0136	CHS	EAS	HARBI1	chr11	46597861	46622227
HARBI1_chr11_46597861_46622227	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0049	CHS	EAS	HARBI1	chr11	46597861	46622227
HAS1_chr19_51708112_51728991	HG00609	hp1	a0001	a0001c0003	a0001c0003t0003	a0001c0003t0003g0061	CHS	EAS	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	HG00609	hp2	a0001	a0001c0003	a0001c0003t0003	a0001c0003t0003g0018	CHS	EAS	HAS1	chr19	51708112	51728991
HAS2_chr8_121607116_121646440	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	CHS	EAS	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	HG00609	hp2	a0001	a0001c0001	a0001c0001t0015	a0001c0001t0015g0179	CHS	EAS	HAS2	chr8	121607116	121646440
HAS3_chr16_69100653_69122660	HG00609	hp1	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0006	CHS	EAS	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HAS3	chr16	69100653	69122660
HASPIN_chr17_3718903_3731699	HG00609	hp1	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0000	CHS	EAS	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	HG00609	hp2	a0009	a0009c0019	a0009c0019t0002	a0009c0019t0002g0000	CHS	EAS	HASPIN	chr17	3718903	3731699
HAT1_chr2_171917461_171988686	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0130	CHS	EAS	HAT1	chr2	171917461	171988686
HAT1_chr2_171917461_171988686	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0050	CHS	EAS	HAT1	chr2	171917461	171988686
HAUS1_chr18_46099385_46133333	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0208	CHS	EAS	HAUS1	chr18	46099385	46133333