JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
HAUS1_chr18_46099385_46133333	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	CHS	EAS	HAUS1	chr18	46099385	46133333
HAUS2_chr15_42543838_42574994	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0165	CHS	EAS	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0193	CHS	EAS	HAUS2	chr15	42543838	42574994
HAUS3_chr4_2223349_2247121	HG00609	hp1	a0001	a0001c0001	a0001c0001t0029	a0001c0001t0029g0065	CHS	EAS	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	HG00609	hp2	a0002	a0002c0002	a0002c0002t0004	a0002c0002t0004g0007	CHS	EAS	HAUS3	chr4	2223349	2247121
HAUS5_chr19_35607735_35630355	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	CHS	EAS	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HAUS5	chr19	35607735	35630355
HAUS6_chr9_19048141_19107904	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0006	CHS	EAS	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	HG00609	hp2	a0001	a0001c0004	a0001c0004t0003	a0001c0004t0003g0289	CHS	EAS	HAUS6	chr9	19048141	19107904
HAUS7_chrX_153442668_153475576	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	CHS	EAS	HAUS7	chrX	153442668	153475576
HBA1_chr16_171680_182522	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HBA1	chr16	171680	182522
HBA1_chr16_171680_182522	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HBA1	chr16	171680	182522
HBA2_chr16_167876_178710	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HBA2	chr16	167876	178710
HBA2_chr16_167876_178710	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HBA2	chr16	167876	178710
HBB_chr11_5220464_5232071	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HBB	chr11	5220464	5232071
HBB_chr11_5220464_5232071	HG00609	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0002	CHS	EAS	HBB	chr11	5220464	5232071
HBD_chr11_5227838_5239483	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HBD	chr11	5227838	5239483
HBD_chr11_5227838_5239483	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HBD	chr11	5227838	5239483
HBE1_chr11_5263345_5274945	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HBE1	chr11	5263345	5274945
HBE1_chr11_5263345_5274945	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HBE1	chr11	5263345	5274945
HBEGF_chr5_140327843_140351603	HG00609	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0003	CHS	EAS	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	HG00609	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	CHS	EAS	HBEGF	chr5	140327843	140351603
HBG1_chr11_5243269_5254857	HG00609	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	CHS	EAS	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0036	CHS	EAS	HBG1	chr11	5243269	5254857
HBG2_chr11_5248188_5259781	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	CHS	EAS	HBG2	chr11	5248188	5259781
HBG2_chr11_5248188_5259781	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0035	CHS	EAS	HBG2	chr11	5248188	5259781
HBM_chr16_160978_171764	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	CHS	EAS	HBM	chr16	160978	171764
HBM_chr16_160978_171764	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HBM	chr16	160978	171764
HBQ1_chr16_175459_186179	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HBQ1	chr16	175459	186179
HBQ1_chr16_175459_186179	HG00609	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	CHS	EAS	HBQ1	chr16	175459	186179
HBZ_chr16_147644_159503	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HBZ	chr16	147644	159503
HBZ_chr16_147644_159503	HG00609	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	CHS	EAS	HBZ	chr16	147644	159503
HCAR1_chr12_122721076_122735844	HG00609	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0000	CHS	EAS	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	HG00609	hp2	a0001	a0001c0001	a0001c0001t0022	a0001c0001t0022g0000	CHS	EAS	HCAR1	chr12	122721076	122735844
HCAR2_chr12_122696293_122708357	HG00609	hp1	a0000	a0000c0004	a0000c0004t0006	a0000c0004t0006g0000	CHS	EAS	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	HG00609	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0000	CHS	EAS	HCAR2	chr12	122696293	122708357
HCAR3_chr12_122709756_122721811	HG00609	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0000	CHS	EAS	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	HG00609	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0000	CHS	EAS	HCAR3	chr12	122709756	122721811
HCCS_chrX_11106332_11128086	HG00609	hp1	a0001	a0001c0001	a0001c0001t0015	a0001c0001t0015g0025	CHS	EAS	HCCS	chrX	11106332	11128086
HCFC1R1_chr16_3017625_3028942	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HCFC1R1	chr16	3017625	3028942
HCFC1R1_chr16_3017625_3028942	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	CHS	EAS	HCFC1R1	chr16	3017625	3028942
HCFC1_chrX_153942557_153976818	HG00609	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0095	CHS	EAS	HCFC1	chrX	153942557	153976818
HCFC2_chr12_104059531_104111524	HG00609	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0002	CHS	EAS	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	HG00609	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0030	CHS	EAS	HCFC2	chr12	104059531	104111524
HCK_chr20_32047242_32106856	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0142	CHS	EAS	HCK	chr20	32047242	32106856
HCK_chr20_32047242_32106856	HG00609	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0044	CHS	EAS	HCK	chr20	32047242	32106856
HCN1_chr5_45249948_45701380	HG00609	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0139	CHS	EAS	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	HG00609	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0055	CHS	EAS	HCN1	chr5	45249948	45701380
HCN2_chr19_584881_622159	HG00609	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0077	CHS	EAS	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	HG00609	hp2	a0011	a0011c0056	a0011c0056t0001	a0011c0056t0001g0286	CHS	EAS	HCN2	chr19	584881	622159