JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
GINS4_chr8_41524261_41550030	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0027	PUR	AMR	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	HG00639	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0009	PUR	AMR	GINS4	chr8	41524261	41550030
GIPC1_chr19_14472762_14501127	HG00639	hp1	a0002	a0002c0004	a0002c0004t0002	a0002c0004t0002g0087	PUR	AMR	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	HG00639	hp2	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0005	PUR	AMR	GIPC1	chr19	14472762	14501127
GIPC2_chr1_78040966_78143444	HG00639	hp1	a0001	a0001c0004	a0001c0004t0007	a0001c0004t0007g0129	PUR	AMR	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	HG00639	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0047	PUR	AMR	GIPC2	chr1	78040966	78143444
GIPC3_chr19_3580478_3598541	HG00639	hp1	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0011	PUR	AMR	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	HG00639	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0035	PUR	AMR	GIPC3	chr19	3580478	3598541
GIPR_chr19_45663221_45688722	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0025	PUR	AMR	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0025	PUR	AMR	GIPR	chr19	45663221	45688722
GIP_chr17_48953554_48973596	HG00639	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0121	PUR	AMR	GIP	chr17	48953554	48973596
GIP_chr17_48953554_48973596	HG00639	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0004	PUR	AMR	GIP	chr17	48953554	48973596
GIT1_chr17_29568475_29594648	HG00639	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0003	PUR	AMR	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	HG00639	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0035	PUR	AMR	GIT1	chr17	29568475	29594648
GJA10_chr6_89889469_89901120	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	GJA10	chr6	89889469	89901120
GJA1_chr6_121430646_121454727	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0123	PUR	AMR	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	HG00639	hp2	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0003	PUR	AMR	GJA1	chr6	121430646	121454727
GJA3_chr13_20133255_20166052	HG00639	hp1	a0001	a0001c0001	a0001c0001t0030	a0001c0001t0030g0128	PUR	AMR	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	HG00639	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0111	PUR	AMR	GJA3	chr13	20133255	20166052
GJA4_chr1_34787999_34800747	HG00639	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	PUR	AMR	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	HG00639	hp2	a0002	a0002c0003	a0002c0003t0003	a0002c0003t0003g0003	PUR	AMR	GJA4	chr1	34787999	34800747
GJA8_chr1_147897795_147914269	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	GJA8	chr1	147897795	147914269
GJA8_chr1_147897795_147914269	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	GJA8	chr1	147897795	147914269
GJA9_chr1_38869069_38886587	HG00639	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	PUR	AMR	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	HG00639	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0033	PUR	AMR	GJA9	chr1	38869069	38886587
GJB1_chrX_71218224_71230516	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	GJB1	chrX	71218224	71230516
GJB2_chr13_20182470_20197938	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	HG00639	hp2	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0010	PUR	AMR	GJB2	chr13	20182470	20197938
GJB3_chr1_34776214_34791364	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	HG00639	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0002	PUR	AMR	GJB3	chr1	34776214	34791364
GJB4_chr1_34754740_34767327	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	HG00639	hp2	a0001	a0001c0016	a0001c0016t0002	a0001c0016t0002g0006	PUR	AMR	GJB4	chr1	34754740	34767327
GJB5_chr1_34750047_34763512	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	GJB5	chr1	34750047	34763512
GJB7_chr6_87277980_87334278	HG00639	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0001	PUR	AMR	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0009	PUR	AMR	GJB7	chr6	87277980	87334278
GJC1_chr17_44793448_44835287	HG00639	hp1	a0001	a0001c0001	a0001c0001t0010	a0001c0001t0010g0050	PUR	AMR	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	HG00639	hp2	a0001	a0001c0001	a0001c0001t0007	a0001c0001t0007g0213	PUR	AMR	GJC1	chr17	44793448	44835287
GJC2_chr1_228144930_228164826	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0044	PUR	AMR	GJC2	chr1	228144930	228164826
GJC3_chr7_99918266_99934620	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	GJC3	chr7	99918266	99934620
GJC3_chr7_99918266_99934620	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0013	PUR	AMR	GJC3	chr7	99918266	99934620
GJD2_chr15_34746032_34759998	HG00639	hp1	a0001	a0001c0003	a0001c0003t0007	a0001c0003t0007g0007	PUR	AMR	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	HG00639	hp2	a0001	a0001c0001	a0001c0001t0008	a0001c0001t0008g0008	PUR	AMR	GJD2	chr15	34746032	34759998
GJD3_chr17_40355652_40369737	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	HG00639	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0000	PUR	AMR	GJD3	chr17	40355652	40369737
GJE1_chr6_142127925_142140358	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	GJE1	chr6	142127925	142140358