JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ABHD4_chr14_22593300_22617963	HG00639	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0048	PUR	AMR	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0010	PUR	AMR	ABHD4	chr14	22593300	22617963
ABHD8_chr19_17287131_17308425	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0279	PUR	AMR	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	HG00639	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0141	PUR	AMR	ABHD8	chr19	17287131	17308425
ABI1_chr10_26741596_26865958	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0122	PUR	AMR	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	HG00639	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0217	PUR	AMR	ABI1	chr10	26741596	26865958
ABI3_chr17_49205707_49228225	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0030	PUR	AMR	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0089	PUR	AMR	ABI3	chr17	49205707	49228225
ABITRAM_chr9_108929400_108945954	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0008	PUR	AMR	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0052	PUR	AMR	ABITRAM	chr9	108929400	108945954
ABL1_chr9_130830254_130892675	HG00639	hp1	a0002	a0002c0005	a0002c0005t0005	a0002c0005t0005g0191	PUR	AMR	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABL1	chr9	130830254	130892675
ABL2_chr1_179094330_179234677	HG00639	hp1	a0001	a0001c0002	a0001c0002t0017	a0001c0002t0017g0269	PUR	AMR	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	HG00639	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0054	PUR	AMR	ABL2	chr1	179094330	179234677
ABLIM1_chr10_114426112_114663275	HG00639	hp1	a0001	a0001c0001	a0001c0001t0028	a0001c0001t0028g0247	PUR	AMR	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	HG00639	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0079	PUR	AMR	ABLIM1	chr10	114426112	114663275
ABLIM2_chr4_7960327_8163813	HG00639	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0296	PUR	AMR	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	HG00639	hp2	a0001	a0001c0001	a0001c0001t0008	a0001c0001t0008g0116	PUR	AMR	ABLIM2	chr4	7960327	8163813
ABRACL_chr6_139023745_139048302	HG00639	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0003	PUR	AMR	ABRACL	chr6	139023745	139048302
ABRACL_chr6_139023745_139048302	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0021	PUR	AMR	ABRACL	chr6	139023745	139048302
ABRAXAS1_chr4_83454517_83490100	HG00639	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0043	PUR	AMR	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	HG00639	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0150	PUR	AMR	ABRAXAS1	chr4	83454517	83490100
ABRAXAS2_chr10_124796819_124841667	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0012	PUR	AMR	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	HG00639	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0154	PUR	AMR	ABRAXAS2	chr10	124796819	124841667
ABRA_chr8_106754483_106775244	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0032	PUR	AMR	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	HG00639	hp2	a0001	a0001c0004	a0001c0004t0001	a0001c0004t0001g0038	PUR	AMR	ABRA	chr8	106754483	106775244
ABR_chr17_998519_1184981	HG00639	hp1	a0002	a0002c0005	a0002c0005t0001	a0002c0005t0001g0186	PUR	AMR	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	HG00639	hp2	a0001	a0001c0001	a0001c0001t0009	a0001c0001t0009g0018	PUR	AMR	ABR	chr17	998519	1184981
ABT1_chr6_26591953_26605739	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	HG00639	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0002	PUR	AMR	ABT1	chr6	26591953	26605739
ABTB1_chr3_127667952_127685926	HG00639	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0004	PUR	AMR	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0020	PUR	AMR	ABTB1	chr3	127667952	127685926
ACAA1_chr3_38117715_38142127	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0072	PUR	AMR	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	HG00639	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0027	PUR	AMR	ACAA1	chr3	38117715	38142127
ACAA2_chr18_49777164_49818533	HG00639	hp1	a0001	a0001c0001	a0001c0001t0010	a0001c0001t0010g0010	PUR	AMR	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	HG00639	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0021	PUR	AMR	ACAA2	chr18	49777164	49818533
ACACA_chr17_37079992_37411836	HG00639	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0171	PUR	AMR	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	HG00639	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0167	PUR	AMR	ACACA	chr17	37079992	37411836
ACACB_chr12_109111587_109273226	HG00639	hp1	a0003	a0003c0005	a0003c0005t0002	a0003c0005t0002g0060	PUR	AMR	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	HG00639	hp2	a0002	a0002c0006	a0002c0006t0003	a0002c0006t0003g0095	PUR	AMR	ACACB	chr12	109111587	109273226
ACAD8_chr11_134248568_134270855	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0063	PUR	AMR	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ACAD8	chr11	134248568	134270855
ACAD9_chr3_128874620_128918114	HG00639	hp1	a0001	a0001c0003	a0001c0003t0006	a0001c0003t0006g0256	PUR	AMR	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	HG00639	hp2	a0001	a0001c0003	a0001c0003t0003	a0001c0003t0003g0069	PUR	AMR	ACAD9	chr3	128874620	128918114
ACADL_chr2_210182923_210230447	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0139	PUR	AMR	ACADL	chr2	210182923	210230447
ACADL_chr2_210182923_210230447	HG00639	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0017	PUR	AMR	ACADL	chr2	210182923	210230447
ACADM_chr1_75719709_75768679	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0069	PUR	AMR	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	HG00639	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0272	PUR	AMR	ACADM	chr1	75719709	75768679
ACADSB_chr10_123004006_123063290	HG00639	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	HG00639	hp2	a0003	a0003c0004	a0003c0004t0006	a0003c0004t0006g0158	PUR	AMR	ACADSB	chr10	123004006	123063290