JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ADAMTS18_chr16_77277128_77440034	HG01071	hp2	a0002	a0002c0006	a0002c0006t0004	a0002c0006t0004g0034	PUR	AMR	ADAMTS18	chr16	77277128	77440034
ADAMTS1_chr21_26830755_26850409	HG01071	hp1	a0002	a0002c0002	a0002c0002t0033	a0002c0002t0033g0055	PUR	AMR	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	HG01071	hp2	a0003	a0003c0004	a0003c0004t0006	a0003c0004t0006g0029	PUR	AMR	ADAMTS1	chr21	26830755	26850409
ADAMTS2_chr5_179105853_179350461	HG01071	hp1	a0018	a0018c0032	a0018c0032t0001	a0018c0032t0001g0088	PUR	AMR	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	HG01071	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0010	PUR	AMR	ADAMTS2	chr5	179105853	179350461
ADAMTS3_chr4_72275969_72574221	HG01071	hp1	a0008	a0008c0019	a0008c0019t0001	a0008c0019t0001g0119	PUR	AMR	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	HG01071	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0079	PUR	AMR	ADAMTS3	chr4	72275969	72574221
ADAMTS5_chr21_26912922_26972088	HG01071	hp1	a0001	a0001c0006	a0001c0006t0009	a0001c0006t0009g0122	PUR	AMR	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	HG01071	hp2	a0004	a0004c0004	a0004c0004t0087	a0004c0004t0087g0102	PUR	AMR	ADAMTS5	chr21	26912922	26972088
ADAMTS6_chr5_65143738_65486920	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0112	PUR	AMR	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0114	PUR	AMR	ADAMTS6	chr5	65143738	65486920
ADAMTS8_chr11_130399923_130433609	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0004	PUR	AMR	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ADAMTS8	chr11	130399923	130433609
ADAMTS9_chr3_64510654_64693000	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	HG01071	hp2	a0002	a0002c0002	a0002c0002t0003	a0002c0002t0003g0150	PUR	AMR	ADAMTS9	chr3	64510654	64693000
ADAMTSL2_chr9_133529704_133580519	HG01071	hp1	a0002	a0002c0002	a0002c0002t0003	a0002c0002t0003g0019	PUR	AMR	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	HG01071	hp2	a0001	a0001c0006	a0001c0006t0001	a0001c0006t0001g0104	PUR	AMR	ADAMTSL2	chr9	133529704	133580519
ADAMTSL3_chr15_83649123_84044842	HG01071	hp1	a0013	a0013c0014	a0013c0014t0002	a0013c0014t0002g0039	PUR	AMR	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	HG01071	hp2	a0003	a0003c0003	a0003c0003t0001	a0003c0003t0001g0186	PUR	AMR	ADAMTSL3	chr15	83649123	84044842
ADAMTSL4_chr1_150544408_150565933	HG01071	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0001	PUR	AMR	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	HG01071	hp2	a0003	a0003c0004	a0003c0004t0001	a0003c0004t0001g0013	PUR	AMR	ADAMTSL4	chr1	150544408	150565933
ADAMTSL5_chr19_1500022_1518019	HG01071	hp1	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0040	PUR	AMR	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	HG01071	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0039	PUR	AMR	ADAMTSL5	chr19	1500022	1518019
ADAP2_chr17_30916945_30964322	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0009	PUR	AMR	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	HG01071	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0022	PUR	AMR	ADAP2	chr17	30916945	30964322
ADARB1_chr21_45069580_45231560	HG01071	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0083	PUR	AMR	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	HG01071	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0196	PUR	AMR	ADARB1	chr21	45069580	45231560
ADAR_chr1_154577057_154613186	HG01071	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0006	PUR	AMR	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	HG01071	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0006	PUR	AMR	ADAR	chr1	154577057	154613186
ADAT1_chr16_75591868_75628281	HG01071	hp1	a0003	a0003c0003	a0003c0003t0003	a0003c0003t0003g0073	PUR	AMR	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	HG01071	hp2	a0005	a0005c0006	a0005c0006t0044	a0005c0006t0044g0123	PUR	AMR	ADAT1	chr16	75591868	75628281
ADAT2_chr6_143417832_143455695	HG01071	hp1	a0001	a0001c0001	a0001c0001t0009	a0001c0001t0009g0035	PUR	AMR	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	HG01071	hp2	a0001	a0001c0001	a0001c0001t0075	a0001c0001t0075g0124	PUR	AMR	ADAT2	chr6	143417832	143455695
ADAT3_chr19_1900399_1918447	HG01071	hp1	a0001	a0001c0007	a0001c0007t0001	a0001c0007t0001g0028	PUR	AMR	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	HG01071	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0005	PUR	AMR	ADAT3	chr19	1900399	1918447
ADA_chr20_44614522_44656699	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0007	PUR	AMR	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ADA	chr20	44614522	44656699
ADCK1_chr14_77795109_77940014	HG01071	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0208	PUR	AMR	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	HG01071	hp2	a0001	a0001c0004	a0001c0004t0002	a0001c0004t0002g0256	PUR	AMR	ADCK1	chr14	77795109	77940014
ADCK2_chr7_140667945_140700110	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	HG01071	hp2	a0003	a0003c0003	a0003c0003t0002	a0003c0003t0002g0005	PUR	AMR	ADCK2	chr7	140667945	140700110
ADCK5_chr8_144369047_144398242	HG01071	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0034	PUR	AMR	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	HG01071	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0089	PUR	AMR	ADCK5	chr8	144369047	144398242
ADCY1_chr7_45569368_45728116	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0179	PUR	AMR	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	HG01071	hp2	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0131	PUR	AMR	ADCY1	chr7	45569368	45728116
ADCY2_chr5_7391138_7835081	HG01071	hp1	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0099	PUR	AMR	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	HG01071	hp2	a0001	a0001c0005	a0001c0005t0001	a0001c0005t0001g0061	PUR	AMR	ADCY2	chr5	7391138	7835081
ADCY3_chr2_24814169_24925237	HG01071	hp1	a0002	a0002c0005	a0002c0005t0004	a0002c0005t0004g0135	PUR	AMR	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	HG01071	hp2	a0001	a0001c0003	a0001c0003t0003	a0001c0003t0003g0232	PUR	AMR	ADCY3	chr2	24814169	24925237
ADCY4_chr14_24313359_24340071	HG01071	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0002	PUR	AMR	ADCY4	chr14	24313359	24340071