JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
GCC1_chr7_127575628_127590596	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	GCC1	chr7	127575628	127590596
GCC2_chr2_108444206_108514415	HG01071	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0067	PUR	AMR	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	HG01071	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0022	PUR	AMR	GCC2	chr2	108444206	108514415
GCDH_chr19_12886160_12904999	HG01071	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0002	PUR	AMR	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	GCDH	chr19	12886160	12904999
GCGR_chr17_81799150_81819008	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	HG01071	hp2	a0001	a0001c0003	a0001c0003t0002	a0001c0003t0002g0005	PUR	AMR	GCGR	chr17	81799150	81819008
GCG_chr2_162137882_162157247	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	GCG	chr2	162137882	162157247
GCG_chr2_162137882_162157247	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	GCG	chr2	162137882	162157247
GCH1_chr14_54837017_54907826	HG01071	hp1	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0265	PUR	AMR	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	HG01071	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0036	PUR	AMR	GCH1	chr14	54837017	54907826
GCHFR_chr15_40759068_40772708	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	GCHFR	chr15	40759068	40772708
GCHFR_chr15_40759068_40772708	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	GCHFR	chr15	40759068	40772708
GCKR_chr2_27491839_27528684	HG01071	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0122	PUR	AMR	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	HG01071	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0030	PUR	AMR	GCKR	chr2	27491839	27528684
GCK_chr7_44139275_44194439	HG01071	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0009	PUR	AMR	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	HG01071	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0272	PUR	AMR	GCK	chr7	44139275	44194439
GCLC_chr6_53492341_53550101	HG01071	hp1	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0389	PUR	AMR	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	HG01071	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0012	PUR	AMR	GCLC	chr6	53492341	53550101
GCLM_chr1_93880199_93914430	HG01071	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0044	PUR	AMR	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	HG01071	hp2	a0001	a0001c0001	a0001c0001t0017	a0001c0001t0017g0028	PUR	AMR	GCLM	chr1	93880199	93914430
GCM1_chr6_53121961_53153841	HG01071	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0233	PUR	AMR	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0018	PUR	AMR	GCM1	chr6	53121961	53153841
GCN1_chr12_120122202_120199715	HG01071	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0004	PUR	AMR	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	HG01071	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0163	PUR	AMR	GCN1	chr12	120122202	120199715
GCNT1_chr9_76454182_76512416	HG01071	hp1	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0131	PUR	AMR	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	HG01071	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0196	PUR	AMR	GCNT1	chr9	76454182	76512416
GCNT2_chr6_10516351_10634368	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0268	PUR	AMR	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0087	PUR	AMR	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10550809_10634368	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0216	PUR	AMR	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0059	PUR	AMR	GCNT2	chr6	10550809	10634368
GCNT4_chr5_75020346_75057558	HG01071	hp1	a0002	a0002c0002	a0002c0002t0013	a0002c0002t0013g0003	PUR	AMR	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	HG01071	hp2	a0002	a0002c0002	a0002c0002t0040	a0002c0002t0040g0013	PUR	AMR	GCNT4	chr5	75020346	75057558
GCSAML_chr1_247544134_247582690	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	PUR	AMR	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0008	PUR	AMR	GCSAML	chr1	247544134	247582690
GCSAM_chr3_112115839_112138248	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0027	PUR	AMR	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	HG01071	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0006	PUR	AMR	GCSAM	chr3	112115839	112138248
GCSH_chr16_81076945_81101395	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0010	PUR	AMR	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0033	PUR	AMR	GCSH	chr16	81076945	81101395
GC_chr4_71736697_71789079	HG01071	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0024	PUR	AMR	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	HG01071	hp2	a0003	a0003c0003	a0003c0003t0001	a0003c0003t0001g0072	PUR	AMR	GC	chr4	71736697	71789079
GDAP1_chr8_74345403_74371876	HG01071	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	PUR	AMR	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	HG01071	hp2	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0126	PUR	AMR	GDAP1	chr8	74345403	74371876
GDAP2_chr1_117858485_117934621	HG01071	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0034	PUR	AMR	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0017	PUR	AMR	GDAP2	chr1	117858485	117934621
GDA_chr9_72144440_72257224	HG01071	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0132	PUR	AMR	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	HG01071	hp2	a0001	a0001c0001	a0001c0001t0015	a0001c0001t0015g0006	PUR	AMR	GDA	chr9	72144440	72257224
GDE1_chr16_19496693_19527098	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0015	PUR	AMR	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	HG01071	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0001	PUR	AMR	GDE1	chr16	19496693	19527098
GDF10_chr10_47295197_47318577	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0046	PUR	AMR	GDF10	chr10	47295197	47318577