JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ABCA10_chr17_69143007_69233824	HG01071	hp1	a0007	a0007c0008	a0007c0008t0007	a0007c0008t0007g0006	PUR	AMR	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	HG01071	hp2	a0004	a0004c0004	a0004c0004t0003	a0004c0004t0003g0209	PUR	AMR	ABCA10	chr17	69143007	69233824
ABCA12_chr2_214926542_215143626	HG01071	hp1	a0009	a0009c0026	a0009c0026t0003	a0009c0026t0003g0053	PUR	AMR	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	HG01071	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0131	PUR	AMR	ABCA12	chr2	214926542	215143626
ABCA1_chr9_104776006_104933155	HG01071	hp1	a0009	a0009c0028	a0009c0028t0009	a0009c0028t0009g0093	PUR	AMR	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	HG01071	hp2	a0001	a0001c0097	a0001c0097t0001	a0001c0097t0001g0106	PUR	AMR	ABCA1	chr9	104776006	104933155
ABCA2_chr9_137002234_137033237	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	HG01071	hp2	a0001	a0001c0005	a0001c0005t0002	a0001c0005t0002g0006	PUR	AMR	ABCA2	chr9	137002234	137033237
ABCA3_chr16_2270881_2345728	HG01071	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0193	PUR	AMR	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	HG01071	hp2	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0023	PUR	AMR	ABCA3	chr16	2270881	2345728
ABCA4_chr1_93987834_94126148	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0185	PUR	AMR	ABCA4	chr1	93987834	94126148
ABCA5_chr17_69239311_69332133	HG01071	hp1	a0003	a0003c0003	a0003c0003t0003	a0003c0003t0003g0033	PUR	AMR	ABCA5	chr17	69239311	69332133
ABCA5_chr17_69239311_69332133	HG01071	hp2	a0005	a0005c0007	a0005c0007t0006	a0005c0007t0006g0344	PUR	AMR	ABCA5	chr17	69239311	69332133
ABCA6_chr17_69073702_69146895	HG01071	hp1	a0005	a0005c0005	a0005c0005t0002	a0005c0005t0002g0127	PUR	AMR	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	HG01071	hp2	a0006	a0006c0007	a0006c0007t0001	a0006c0007t0001g0021	PUR	AMR	ABCA6	chr17	69073702	69146895
ABCA7_chr19_1035107_1070572	HG01071	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0015	PUR	AMR	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	HG01071	hp2	a0017	a0017c0017	a0017c0017t0001	a0017c0017t0001g0027	PUR	AMR	ABCA7	chr19	1035107	1070572
ABCA8_chr17_68862289_68960392	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0019	PUR	AMR	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	HG01071	hp2	a0002	a0002c0006	a0002c0006t0001	a0002c0006t0001g0001	PUR	AMR	ABCA8	chr17	68862289	68960392
ABCA9_chr17_68969488_69065927	HG01071	hp1	a0007	a0007c0009	a0007c0009t0005	a0007c0009t0005g0010	PUR	AMR	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	HG01071	hp2	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0134	PUR	AMR	ABCA9	chr17	68969488	69065927
ABCB10_chr1_229511582_229563707	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0162	PUR	AMR	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	HG01071	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0090	PUR	AMR	ABCB10	chr1	229511582	229563707
ABCB11_chr2_168915781_169036324	HG01071	hp1	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0152	PUR	AMR	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	HG01071	hp2	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0001	PUR	AMR	ABCB11	chr2	168915781	169036324
ABCB1_chr7_87498017_87605884	HG01071	hp1	a0001	a0001c0005	a0001c0005t0003	a0001c0005t0003g0002	PUR	AMR	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	HG01071	hp2	a0001	a0001c0005	a0001c0005t0007	a0001c0005t0007g0003	PUR	AMR	ABCB1	chr7	87498017	87605884
ABCB5_chr7_20610667_20762008	HG01071	hp1	a0004	a0004c0004	a0004c0004t0001	a0004c0004t0001g0133	PUR	AMR	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	HG01071	hp2	a0007	a0007c0011	a0007c0011t0004	a0007c0011t0004g0059	PUR	AMR	ABCB5	chr7	20610667	20762008
ABCB6_chr2_219204772_219223958	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABCB6	chr2	219204772	219223958
ABCB7_chrX_75046048_75161283	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0184	PUR	AMR	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	HG01071	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0073	PUR	AMR	ABCB7	chrX	75046048	75161283
ABCB8_chr7_151023450_151052782	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0014	PUR	AMR	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	HG01071	hp2	a0001	a0001c0010	a0001c0010t0001	a0001c0010t0001g0002	PUR	AMR	ABCB8	chr7	151023450	151052782
ABCB9_chr12_122923992_122971463	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0126	PUR	AMR	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	ABCB9	chr12	122923992	122971463
ABCC11_chr16_48160773_48252539	HG01071	hp1	a0002	a0002c0019	a0002c0019t0001	a0002c0019t0001g0096	PUR	AMR	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	HG01071	hp2	a0006	a0006c0005	a0006c0005t0005	a0006c0005t0005g0001	PUR	AMR	ABCC11	chr16	48160773	48252539
ABCC1_chr16_15944616_16148053	HG01071	hp1	a0001	a0001c0004	a0001c0004t0013	a0001c0004t0013g0047	PUR	AMR	ABCC1	chr16	15944616	16148053
ABCC1_chr16_15944616_16148053	HG01071	hp2	a0001	a0001c0005	a0001c0005t0004	a0001c0005t0004g0169	PUR	AMR	ABCC1	chr16	15944616	16148053
ABCC5_chr3_183914934_184022884	HG01071	hp1	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0053	PUR	AMR	ABCC5	chr3	183914934	184022884
ABCC5_chr3_183914934_184022884	HG01071	hp2	a0001	a0001c0003	a0001c0003t0002	a0001c0003t0002g0354	PUR	AMR	ABCC5	chr3	183914934	184022884
ABCD1_chrX_153719856_153749755	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	HG01071	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0001	PUR	AMR	ABCD1	chrX	153719856	153749755
ABCD2_chr12_39545033_39624803	HG01071	hp1	a0002	a0002c0002	a0002c0002t0004	a0002c0002t0004g0005	PUR	AMR	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	HG01071	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	PUR	AMR	ABCD2	chr12	39545033	39624803
ABCD4_chr14_74280269_74307934	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	HG01071	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0007	PUR	AMR	ABCD4	chr14	74280269	74307934