JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ABCE1_chr4_145093311_145134524	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0059	PUR	AMR	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0040	PUR	AMR	ABCE1	chr4	145093311	145134524
ABCF1_chr6_30566442_30596522	HG01071	hp1	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0001	PUR	AMR	ABCF1	chr6	30566442	30596522
ABCF1_chr6_30566442_30596522	HG01071	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0003	PUR	AMR	ABCF1	chr6	30566442	30596522
ABCF2_chr7_151206484_151232205	HG01071	hp1	a0001	a0001c0003	a0001c0003t0002	a0001c0003t0002g0018	PUR	AMR	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABCF2	chr7	151206484	151232205
ABCF3_chr3_184181199_184199005	HG01071	hp1	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0001	PUR	AMR	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0009	PUR	AMR	ABCF3	chr3	184181199	184199005
ABCG1_chr21_42214140_42302244	HG01071	hp1	a0001	a0001c0006	a0001c0006t0001	a0001c0006t0001g0006	PUR	AMR	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	HG01071	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0134	PUR	AMR	ABCG1	chr21	42214140	42302244
ABCG2_chr4_88085269_88163639	HG01071	hp1	a0005	a0005c0007	a0005c0007t0001	a0005c0007t0001g0005	PUR	AMR	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	HG01071	hp2	a0002	a0002c0004	a0002c0004t0001	a0002c0004t0001g0208	PUR	AMR	ABCG2	chr4	88085269	88163639
ABCG5_chr2_43807472_43843839	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0011	PUR	AMR	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0135	PUR	AMR	ABCG5	chr2	43807472	43843839
ABCG8_chr2_43833971_43887988	HG01071	hp1	a0004	a0004c0007	a0004c0007t0007	a0004c0007t0007g0006	PUR	AMR	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	HG01071	hp2	a0003	a0003c0002	a0003c0002t0002	a0003c0002t0002g0290	PUR	AMR	ABCG8	chr2	43833971	43887988
ABHD10_chr3_111974026_111998368	HG01071	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	PUR	AMR	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ABHD10	chr3	111974026	111998368
ABHD11_chr7_73731094_73743802	HG01071	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0002	PUR	AMR	ABHD11	chr7	73731094	73743802
ABHD11_chr7_73731094_73743802	HG01071	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0002	PUR	AMR	ABHD11	chr7	73731094	73743802
ABHD12B_chr14_50867053_50909970	HG01071	hp1	a0001	a0001c0006	a0001c0006t0001	a0001c0006t0001g0219	PUR	AMR	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0011	PUR	AMR	ABHD12B	chr14	50867053	50909970
ABHD12_chr20_25295214_25395835	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0057	PUR	AMR	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0017	PUR	AMR	ABHD12	chr20	25295214	25395835
ABHD13_chr13_108213392_108239243	HG01071	hp1	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0008	PUR	AMR	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABHD13	chr13	108213392	108239243
ABHD14A_chr3_51970064_51986196	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	HG01071	hp2	a0003	a0003c0004	a0003c0004t0001	a0003c0004t0001g0001	PUR	AMR	ABHD14A	chr3	51970064	51986196
ABHD14B_chr3_51963515_51979049	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0008	PUR	AMR	ABHD14B	chr3	51963515	51979049
ABHD14B_chr3_51963515_51979049	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABHD14B	chr3	51963515	51979049
ABHD15_chr17_29555547_29572037	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0020	PUR	AMR	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	HG01071	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0008	PUR	AMR	ABHD15	chr17	29555547	29572037
ABHD16A_chr6_31681955_31708324	HG01071	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0012	PUR	AMR	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0065	PUR	AMR	ABHD16A	chr6	31681955	31708324
ABHD16B_chr20_63856498_63867988	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	ABHD16B	chr20	63856498	63867988
ABHD17A_chr19_1871810_1890496	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0004	PUR	AMR	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0004	PUR	AMR	ABHD17A	chr19	1871810	1890496
ABHD17B_chr9_71860152_71916193	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0144	PUR	AMR	ABHD17B	chr9	71860152	71916193
ABHD17B_chr9_71860152_71916193	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0053	PUR	AMR	ABHD17B	chr9	71860152	71916193
ABHD17C_chr15_80690310_80760621	HG01071	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0096	PUR	AMR	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	HG01071	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0328	PUR	AMR	ABHD17C	chr15	80690310	80760621
ABHD4_chr14_22593300_22617963	HG01071	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0022	PUR	AMR	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	PUR	AMR	ABHD4	chr14	22593300	22617963
ABHD5_chr3_43685938_43727725	HG01071	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	HG01071	hp2	a0001	a0001c0001	a0001c0001t0008	a0001c0001t0008g0001	PUR	AMR	ABHD5	chr3	43685938	43727725
ABHD6_chr3_58232792_58299734	HG01071	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0046	PUR	AMR	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	HG01071	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0102	PUR	AMR	ABHD6	chr3	58232792	58299734
ABHD8_chr19_17287131_17308425	HG01071	hp1	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0004	PUR	AMR	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	HG01071	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	PUR	AMR	ABHD8	chr19	17287131	17308425