JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
FOS_chr14_75273828_75287230	HG01109	hp1	a0001	a0001c0004	a0001c0004t0001	a0001c0004t0001g0002	PUR	AMR	FOS	chr14	75273828	75287230
FOS_chr14_75273828_75287230	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	FOS	chr14	75273828	75287230
FOXA1_chr14_37584552_37600249	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	FOXA1	chr14	37584552	37600249
FOXA1_chr14_37584552_37600249	HG01109	hp2	a0002	a0002c0002	a0002c0002t0028	a0002c0002t0028g0038	PUR	AMR	FOXA1	chr14	37584552	37600249
FOXA2_chr20_22575998_22589572	HG01109	hp1	a0001	a0001c0003	a0001c0003t0028	a0001c0003t0028g0042	PUR	AMR	FOXA2	chr20	22575998	22589572
FOXA2_chr20_22575998_22589572	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	FOXA2	chr20	22575998	22589572
FOXA3_chr19_45859326_45878797	HG01109	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0087	PUR	AMR	FOXA3	chr19	45859326	45878797
FOXA3_chr19_45859326_45878797	HG01109	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0039	PUR	AMR	FOXA3	chr19	45859326	45878797
FOXB1_chr15_59999311_60012444	HG01109	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0001	PUR	AMR	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	HG01109	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0001	PUR	AMR	FOXB1	chr15	59999311	60012444
FOXB2_chr9_77014655_77025953	HG01109	hp1	a0001	a0001c0002	a0001c0002t0000	a0001c0002t0000g0000	PUR	AMR	FOXB2	chr9	77014655	77025953
FOXB2_chr9_77014655_77025953	HG01109	hp2	a0001	a0001c0001	a0001c0001t0000	a0001c0001t0000g0000	PUR	AMR	FOXB2	chr9	77014655	77025953
FOXC1_chr6_1604915_1618897	HG01109	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0000	PUR	AMR	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	HG01109	hp2	a0001	a0001c0001	a0001c0001t0009	a0001c0001t0009g0000	PUR	AMR	FOXC1	chr6	1604915	1618897
FOXC2_chr16_86561829_86574728	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	HG01109	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0000	PUR	AMR	FOXC2	chr16	86561829	86574728
FOXD1_chr5_73441266_73453777	HG01109	hp1	a0003	a0003c0005	a0003c0005t0001	a0003c0005t0001g0000	PUR	AMR	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	HG01109	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0000	PUR	AMR	FOXD1	chr5	73441266	73453777
FOXD2_chr1_47433044_47445691	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	HG01109	hp2	a0002	a0002c0002	a0002c0002t0003	a0002c0002t0003g0000	PUR	AMR	FOXD2	chr1	47433044	47445691
FOXD3_chr1_63317567_63330128	HG01109	hp1	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0000	PUR	AMR	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	FOXD3	chr1	63317567	63330128
FOXD4L1_chr2_113493665_113506150	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	HG01109	hp2	a0006	a0006c0013	a0006c0013t0003	a0006c0013t0003g0000	PUR	AMR	FOXD4L1	chr2	113493665	113506150
FOXD4L4_chr9_65732146_65743396	HG01109	hp1	a0014	a0014c0017	a0014c0017t0000	a0014c0017t0000g0000	PUR	AMR	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	HG01109	hp2	a0001	a0001c0001	a0001c0001t0000	a0001c0001t0000g0000	PUR	AMR	FOXD4L4	chr9	65732146	65743396
FOXD4L6_chr9_41121435_41133681	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	FOXD4L6	chr9	41121435	41133681
FOXD4_chr9_111231_123417	HG01109	hp1	a0000	a0000c0002	a0000c0002t0009	a0000c0002t0009g0000	PUR	AMR	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	HG01109	hp2	a0008	a0008c0014	a0008c0014t0001	a0008c0014t0001g0000	PUR	AMR	FOXD4	chr9	111231	123417
FOXE1_chr9_97848226_97861717	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	FOXE1	chr9	97848226	97861717
FOXE3_chr1_47411285_47423052	HG01109	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0000	PUR	AMR	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	HG01109	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0000	PUR	AMR	FOXE3	chr1	47411285	47423052
FOXF1_chr16_86505527_86520422	HG01109	hp1	a0001	a0001c0001	a0001c0001t0008	a0001c0001t0008g0005	PUR	AMR	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	HG01109	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0003	PUR	AMR	FOXF1	chr16	86505527	86520422
FOXF2_chr6_1384576_1400603	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	HG01109	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0069	PUR	AMR	FOXF2	chr6	1384576	1400603
FOXG1_chr14_28761787_28775277	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	HG01109	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0000	PUR	AMR	FOXG1	chr14	28761787	28775277
FOXH1_chr8_144468412_144480849	HG01109	hp1	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0004	PUR	AMR	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	FOXH1	chr8	144468412	144480849
FOXI1_chr5_170100897_170114734	HG01109	hp1	a0001	a0001c0003	a0001c0003t0004	a0001c0003t0004g0006	PUR	AMR	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	FOXI1	chr5	170100897	170114734
FOXI2_chr10_127732185_127746183	HG01109	hp1	a0001	a0001c0001	a0001c0001t0010	a0001c0001t0010g0001	PUR	AMR	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	HG01109	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0001	PUR	AMR	FOXI2	chr10	127732185	127746183
FOXI3_chr2_88441787_88457693	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0023	PUR	AMR	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	FOXI3	chr2	88441787	88457693
FOXJ1_chr17_76131333_76146245	HG01109	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0005	PUR	AMR	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	HG01109	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0003	PUR	AMR	FOXJ1	chr17	76131333	76146245