JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
FOXJ2_chr12_8027716_8060517	HG01109	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0001	PUR	AMR	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0021	PUR	AMR	FOXJ2	chr12	8027716	8060517
FOXK1_chr7_4677295_4776442	HG01109	hp1	a0002	a0002c0012	a0002c0012t0016	a0002c0012t0016g0291	PUR	AMR	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	HG01109	hp2	a0001	a0001c0010	a0001c0010t0110	a0001c0010t0110g0274	PUR	AMR	FOXK1	chr7	4677295	4776442
FOXK2_chr17_82514732_82609602	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0271	PUR	AMR	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	HG01109	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0110	PUR	AMR	FOXK2	chr17	82514732	82609602
FOXL1_chr16_86573549_86588478	HG01109	hp1	a0001	a0001c0010	a0001c0010t0011	a0001c0010t0011g0000	PUR	AMR	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	HG01109	hp2	a0001	a0001c0001	a0001c0001t0018	a0001c0001t0018g0000	PUR	AMR	FOXL1	chr16	86573549	86588478
FOXL2NB_chr3_138942217_138958990	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	HG01109	hp2	a0001	a0001c0002	a0001c0002t0009	a0001c0002t0009g0006	PUR	AMR	FOXL2NB	chr3	138942217	138958990
FOXL2_chr3_138939224_138952137	HG01109	hp1	a0002	a0002c0002	a0002c0002t0022	a0002c0002t0022g0000	PUR	AMR	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	FOXL2	chr3	138939224	138952137
FOXL3_chr7_285170_296488	HG01109	hp1	a0002	a0002c0002	a0002c0002t0000	a0002c0002t0000g0001	PUR	AMR	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	HG01109	hp2	a0001	a0001c0001	a0001c0001t0000	a0001c0001t0000g0001	PUR	AMR	FOXL3	chr7	285170	296488
FOXM1_chr12_2852680_2882174	HG01109	hp1	a0008	a0008c0012	a0008c0012t0002	a0008c0012t0002g0066	PUR	AMR	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0117	PUR	AMR	FOXM1	chr12	2852680	2882174
FOXN1_chr17_28501348_28543900	HG01109	hp1	a0001	a0001c0001	a0001c0001t0008	a0001c0001t0008g0002	PUR	AMR	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	HG01109	hp2	a0002	a0002c0002	a0002c0002t0005	a0002c0002t0005g0238	PUR	AMR	FOXN1	chr17	28501348	28543900
FOXN2_chr2_48309682_48384295	HG01109	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0265	PUR	AMR	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	HG01109	hp2	a0001	a0001c0002	a0001c0002t0010	a0001c0002t0010g0246	PUR	AMR	FOXN2	chr2	48309682	48384295
FOXN3_chr14_89151177_89422233	HG01109	hp1	a0001	a0001c0001	a0001c0001t0071	a0001c0001t0071g0186	PUR	AMR	FOXN3	chr14	89151177	89422233
FOXN3_chr14_89151177_89422233	HG01109	hp2	a0001	a0001c0001	a0001c0001t0017	a0001c0001t0017g0037	PUR	AMR	FOXN3	chr14	89151177	89422233
FOXN4_chr12_109272978_109314284	HG01109	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0034	PUR	AMR	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0184	PUR	AMR	FOXN4	chr12	109272978	109314284
FOXO1_chr13_40550667_40671641	HG01109	hp1	a0002	a0002c0002	a0002c0002t0003	a0002c0002t0003g0038	PUR	AMR	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	HG01109	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0061	PUR	AMR	FOXO1	chr13	40550667	40671641
FOXO3B_chr17_18662629_18687314	HG01109	hp1	a0006	a0006c0006	a0006c0006t0025	a0006c0006t0025g0113	PUR	AMR	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	HG01109	hp2	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0165	PUR	AMR	FOXO3B	chr17	18662629	18687314
FOXO4_chrX_71090851_71108532	HG01109	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	PUR	AMR	FOXO4	chrX	71090851	71108532
FOXP1_chr3_70949708_71588728	HG01109	hp1	a0001	a0001c0001	a0001c0001t0029	a0001c0001t0029g0071	PUR	AMR	FOXP1	chr3	70949708	71588728
FOXP1_chr3_70949708_71588728	HG01109	hp2	a0001	a0001c0001	a0001c0001t0048	a0001c0001t0048g0031	PUR	AMR	FOXP1	chr3	70949708	71588728
FOXP3_chrX_49245438_49269710	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0017	PUR	AMR	FOXP3	chrX	49245438	49269710
FOXP4_chr6_41541381_41607384	HG01109	hp1	a0002	a0002c0007	a0002c0007t0014	a0002c0007t0014g0003	PUR	AMR	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0034	PUR	AMR	FOXP4	chr6	41541381	41607384
FOXQ1_chr6_1307098_1319758	HG01109	hp1	a0007	a0007c0010	a0007c0010t0003	a0007c0010t0003g0000	PUR	AMR	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	HG01109	hp2	a0006	a0006c0008	a0006c0008t0002	a0006c0008t0002g0000	PUR	AMR	FOXQ1	chr6	1307098	1319758
FOXR1_chr11_118966761_118986287	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	FOXR1	chr11	118966761	118986287
FOXR1_chr11_118966761_118986287	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	FOXR1	chr11	118966761	118986287
FOXR2_chrX_55618400_55631192	HG01109	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0000	PUR	AMR	FOXR2	chrX	55618400	55631192
FOXRED1_chr11_126264154_126283126	HG01109	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0215	PUR	AMR	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	HG01109	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0006	PUR	AMR	FOXRED1	chr11	126264154	126283126
FOXRED2_chr22_36482190_36512040	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	HG01109	hp2	a0001	a0001c0001	a0001c0001t0016	a0001c0001t0016g0047	PUR	AMR	FOXRED2	chr22	36482190	36512040
FOXS1_chr20_31839303_31850604	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0000	PUR	AMR	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	HG01109	hp2	a0006	a0006c0009	a0006c0009t0002	a0006c0009t0002g0000	PUR	AMR	FOXS1	chr20	31839303	31850604
FPGS_chr9_127797882_127819081	HG01109	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0120	PUR	AMR	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	HG01109	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0002	PUR	AMR	FPGS	chr9	127797882	127819081
FPGT_chr1_74193242_74213702	HG01109	hp1	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0004	PUR	AMR	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	HG01109	hp2	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0007	PUR	AMR	FPGT	chr1	74193242	74213702
FPR1_chr19_51740773_51756878	HG01109	hp1	a0001	a0001c0011	a0001c0011t0001	a0001c0011t0001g0013	PUR	AMR	FPR1	chr19	51740773	51756878