JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ABHD1_chr2_27118815_27135812	HG01109	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0040	PUR	AMR	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABHD1	chr2	27118815	27135812
ABHD2_chr15_89083456_89207355	HG01109	hp1	a0001	a0001c0008	a0001c0008t0001	a0001c0008t0001g0228	PUR	AMR	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0044	PUR	AMR	ABHD2	chr15	89083456	89207355
ABHD3_chr18_21645901_21709774	HG01109	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0212	PUR	AMR	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0090	PUR	AMR	ABHD3	chr18	21645901	21709774
ABHD4_chr14_22593300_22617963	HG01109	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0017	PUR	AMR	ABHD4	chr14	22593300	22617963
ABHD4_chr14_22593300_22617963	HG01109	hp2	a0001	a0001c0001	a0001c0001t0011	a0001c0001t0011g0049	PUR	AMR	ABHD4	chr14	22593300	22617963
ABHD5_chr3_43685938_43727725	HG01109	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0121	PUR	AMR	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	HG01109	hp2	a0002	a0002c0003	a0002c0003t0012	a0002c0003t0012g0018	PUR	AMR	ABHD5	chr3	43685938	43727725
ABHD6_chr3_58232792_58299734	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0194	PUR	AMR	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	HG01109	hp2	a0001	a0001c0001	a0001c0001t0017	a0001c0001t0017g0029	PUR	AMR	ABHD6	chr3	58232792	58299734
ABHD8_chr19_17287131_17308425	HG01109	hp1	a0001	a0001c0003	a0001c0003t0003	a0001c0003t0003g0084	PUR	AMR	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	HG01109	hp2	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0089	PUR	AMR	ABHD8	chr19	17287131	17308425
ABI1_chr10_26741596_26865958	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0064	PUR	AMR	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0142	PUR	AMR	ABI1	chr10	26741596	26865958
ABI2_chr2_203323394_203437169	HG01109	hp1	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0167	PUR	AMR	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0271	PUR	AMR	ABI2	chr2	203323394	203437169
ABI3_chr17_49205707_49228225	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0019	PUR	AMR	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0152	PUR	AMR	ABI3	chr17	49205707	49228225
ABITRAM_chr9_108929400_108945954	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0009	PUR	AMR	ABITRAM	chr9	108929400	108945954
ABITRAM_chr9_108929400_108945954	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0034	PUR	AMR	ABITRAM	chr9	108929400	108945954
ABL1_chr9_130830254_130892675	HG01109	hp1	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0105	PUR	AMR	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	HG01109	hp2	a0006	a0006c0017	a0006c0017t0001	a0006c0017t0001g0111	PUR	AMR	ABL1	chr9	130830254	130892675
ABL2_chr1_179094330_179234677	HG01109	hp1	a0001	a0001c0001	a0001c0001t0020	a0001c0001t0020g0235	PUR	AMR	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	HG01109	hp2	a0001	a0001c0001	a0001c0001t0071	a0001c0001t0071g0101	PUR	AMR	ABL2	chr1	179094330	179234677
ABLIM1_chr10_114426112_114663275	HG01109	hp1	a0010	a0010c0014	a0010c0014t0084	a0010c0014t0084g0148	PUR	AMR	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	HG01109	hp2	a0001	a0001c0001	a0001c0001t0087	a0001c0001t0087g0019	PUR	AMR	ABLIM1	chr10	114426112	114663275
ABLIM2_chr4_7960327_8163813	HG01109	hp1	a0001	a0001c0002	a0001c0002t0005	a0001c0002t0005g0140	PUR	AMR	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	HG01109	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0213	PUR	AMR	ABLIM2	chr4	7960327	8163813
ABRACL_chr6_139023745_139048302	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0132	PUR	AMR	ABRACL	chr6	139023745	139048302
ABRACL_chr6_139023745_139048302	HG01109	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0003	PUR	AMR	ABRACL	chr6	139023745	139048302
ABRAXAS1_chr4_83454517_83490100	HG01109	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0069	PUR	AMR	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	HG01109	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0048	PUR	AMR	ABRAXAS1	chr4	83454517	83490100
ABRAXAS2_chr10_124796819_124841667	HG01109	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0120	PUR	AMR	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	HG01109	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0201	PUR	AMR	ABRAXAS2	chr10	124796819	124841667
ABRA_chr8_106754483_106775244	HG01109	hp1	a0001	a0001c0004	a0001c0004t0001	a0001c0004t0001g0026	PUR	AMR	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABRA	chr8	106754483	106775244
ABR_chr17_998519_1184981	HG01109	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0168	PUR	AMR	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	HG01109	hp2	a0001	a0001c0003	a0001c0003t0083	a0001c0003t0083g0285	PUR	AMR	ABR	chr17	998519	1184981
ABTB1_chr3_127667952_127685926	HG01109	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0005	PUR	AMR	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ABTB1	chr3	127667952	127685926
ABTB3_chr12_107313434_107664642	HG01109	hp1	a0003	a0003c0021	a0003c0021t0006	a0003c0021t0006g0151	PUR	AMR	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	HG01109	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0120	PUR	AMR	ABTB3	chr12	107313434	107664642
ACAA1_chr3_38117715_38142127	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0009	PUR	AMR	ACAA1	chr3	38117715	38142127
ACAA2_chr18_49777164_49818533	HG01109	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0082	PUR	AMR	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	HG01109	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0197	PUR	AMR	ACAA2	chr18	49777164	49818533
ACACA_chr17_37079992_37411836	HG01109	hp1	a0001	a0001c0004	a0001c0004t0005	a0001c0004t0005g0158	PUR	AMR	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	HG01109	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0186	PUR	AMR	ACACA	chr17	37079992	37411836