JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
ACACB_chr12_109111587_109273226	HG01109	hp1	a0003	a0003c0083	a0003c0083t0001	a0003c0083t0001g0151	PUR	AMR	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	HG01109	hp2	a0006	a0006c0120	a0006c0120t0003	a0006c0120t0003g0043	PUR	AMR	ACACB	chr12	109111587	109273226
ACAD11_chr3_132553141_132664809	HG01109	hp1	a0003	a0003c0003	a0003c0003t0001	a0003c0003t0001g0259	PUR	AMR	ACAD11	chr3	132553141	132664809
ACAD11_chr3_132553141_132664809	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0166	PUR	AMR	ACAD11	chr3	132553141	132664809
ACAD8_chr11_134248568_134270855	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0004	PUR	AMR	ACAD8	chr11	134248568	134270855
ACAD8_chr11_134248568_134270855	HG01109	hp2	a0003	a0003c0003	a0003c0003t0001	a0003c0003t0001g0017	PUR	AMR	ACAD8	chr11	134248568	134270855
ACAD9_chr3_128874620_128918114	HG01109	hp1	a0001	a0001c0003	a0001c0003t0003	a0001c0003t0003g0044	PUR	AMR	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0228	PUR	AMR	ACAD9	chr3	128874620	128918114
ACADL_chr2_210182923_210230447	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0191	PUR	AMR	ACADL	chr2	210182923	210230447
ACADL_chr2_210182923_210230447	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0196	PUR	AMR	ACADL	chr2	210182923	210230447
ACADM_chr1_75719709_75768679	HG01109	hp1	a0001	a0001c0002	a0001c0002t0003	a0001c0002t0003g0317	PUR	AMR	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	HG01109	hp2	a0001	a0001c0004	a0001c0004t0005	a0001c0004t0005g0291	PUR	AMR	ACADM	chr1	75719709	75768679
ACADSB_chr10_123004006_123063290	HG01109	hp1	a0001	a0001c0002	a0001c0002t0007	a0001c0002t0007g0130	PUR	AMR	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	HG01109	hp2	a0001	a0001c0001	a0001c0001t0015	a0001c0001t0015g0229	PUR	AMR	ACADSB	chr10	123004006	123063290
ACADS_chr12_120720826_120745008	HG01109	hp1	a0001	a0001c0006	a0001c0006t0007	a0001c0006t0007g0051	PUR	AMR	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	HG01109	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0095	PUR	AMR	ACADS	chr12	120720826	120745008
ACADVL_chr17_7214938_7230266	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PUR	AMR	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0009	PUR	AMR	ACADVL	chr17	7214938	7230266
ACAN_chr15_88798436_88880353	HG01109	hp1	a0042	a0042c0115	a0042c0115t0004	a0042c0115t0004g0047	PUR	AMR	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	HG01109	hp2	a0027	a0027c0102	a0027c0102t0001	a0027c0102t0001g0020	PUR	AMR	ACAN	chr15	88798436	88880353
ACAP1_chr17_7331529_7356477	HG01109	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0024	PUR	AMR	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	HG01109	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0046	PUR	AMR	ACAP1	chr17	7331529	7356477
ACAP2_chr3_195269745_195448020	HG01109	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0184	PUR	AMR	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	HG01109	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0312	PUR	AMR	ACAP2	chr3	195269745	195448020
ACAP3_chr1_1287391_1312930	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0068	PUR	AMR	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	HG01109	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0021	PUR	AMR	ACAP3	chr1	1287391	1312930
ACAT1_chr11_108116567_108152603	HG01109	hp1	a0001	a0001c0001	a0001c0001t0006	a0001c0001t0006g0158	PUR	AMR	ACAT1	chr11	108116567	108152603
ACAT1_chr11_108116567_108152603	HG01109	hp2	a0002	a0002c0002	a0002c0002t0002	a0002c0002t0002g0030	PUR	AMR	ACAT1	chr11	108116567	108152603
ACAT2_chr6_159757045_159784112	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0014	PUR	AMR	ACAT2	chr6	159757045	159784112
ACAT2_chr6_159757045_159784112	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0099	PUR	AMR	ACAT2	chr6	159757045	159784112
ACBD3_chr1_226139679_226191741	HG01109	hp1	a0002	a0002c0002	a0002c0002t0003	a0002c0002t0003g0129	PUR	AMR	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0320	PUR	AMR	ACBD3	chr1	226139679	226191741
ACBD4_chr17_45130687_45149176	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0030	PUR	AMR	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0008	PUR	AMR	ACBD4	chr17	45130687	45149176
ACBD5_chr10_27190214_27245797	HG01109	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0091	PUR	AMR	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	HG01109	hp2	a0002	a0002c0004	a0002c0004t0001	a0002c0004t0001g0176	PUR	AMR	ACBD5	chr10	27190214	27245797
ACBD6_chr1_180283230_180507577	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0193	PUR	AMR	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0162	PUR	AMR	ACBD6	chr1	180283230	180507577
ACBD7_chr10_15070475_15093776	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	HG01109	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0092	PUR	AMR	ACBD7	chr10	15070475	15093776
ACCSL_chr11_44042981_44064977	HG01109	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0003	PUR	AMR	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0031	PUR	AMR	ACCSL	chr11	44042981	44064977
ACCS_chr11_44061270_44089237	HG01109	hp1	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0009	PUR	AMR	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	HG01109	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0108	PUR	AMR	ACCS	chr11	44061270	44089237
ACD_chr16_67652512_67665260	HG01109	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0001	PUR	AMR	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PUR	AMR	ACD	chr16	67652512	67665260
ACE2_chrX_15556033_15605960	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PUR	AMR	ACE2	chrX	15556033	15605960
ACER1_chr19_6301142_6338612	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0274	PUR	AMR	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	HG01109	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0125	PUR	AMR	ACER1	chr19	6301142	6338612
ACER2_chr9_19404009_19457505	HG01109	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0009	PUR	AMR	ACER2	chr9	19404009	19457505